View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8266_high_12 (Length: 282)
Name: NF8266_high_12
Description: NF8266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8266_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 95 - 264
Target Start/End: Original strand, 4855963 - 4856132
Alignment:
| Q |
95 |
attccaaatgacaaattttggaagcaagatggtattgaagcactgagcatgttctgcgataggtccatcatgttgatctttgttaaccgacacaattgaa |
194 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||| ||||||||||| | ||||||||||| |||| ||||||| |||||||||||||||||| |
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| T |
4855963 |
attccaaatgacatatttcggaagcaagatggtattgaagcattgagcatgttccgtgataggtccattatgtcgatcttttttaaccgacacaattgaa |
4856062 |
T |
|
| Q |
195 |
ttggaatatctccttccaaattgttccctccaagtaaaagagcacgtaactctaaaagattgtccatcca |
264 |
Q |
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| T |
4856063 |
ttggaatatctccttccaagttgttccctcctagtaaaagaacacgtaactctgataggttatccatcca |
4856132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 89 - 264
Target Start/End: Complemental strand, 5161153 - 5160978
Alignment:
| Q |
89 |
tgtcctattccaaatgacaaattttggaagcaagatggtattgaagcactgagcatgttctgcgataggtccatcatgttgatctttgttaaccgacaca |
188 |
Q |
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|||||||| ||||||| ||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||| |||| ||||||| |
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| T |
5161153 |
tgtcctataccaaatgtcaaattttggaagcaagatggtattgaagcattgaacatgttccgcgataggtccatcatgttgatcttttttaatcgacaca |
5161054 |
T |
|
| Q |
189 |
attgaattggaatatctccttccaaattgttccctccaagtaaaagagcacgtaactctaaaagattgtccatcca |
264 |
Q |
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| T |
5161053 |
attgaattggaatatctccttccaagttattccatcctagtaaaagaacacgcaactctgagagattatcaatcca |
5160978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 95 - 264
Target Start/End: Complemental strand, 5214951 - 5214782
Alignment:
| Q |
95 |
attccaaatgacaaattttggaagcaagatggtattgaagcactgagcatgttctgcgataggtccatcatgttgatctttgttaaccgacacaattgaa |
194 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||| ||||||||||| | ||||||||||| |||| |||||| |||||||||||||||||| |
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| T |
5214951 |
attccaaatgacatatttcggaagcaagatggtattgaagcattgagcatgttccgtgataggtccattatgtctatcttttttaaccgacacaattgaa |
5214852 |
T |
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| Q |
195 |
ttggaatatctccttccaaattgttccctccaagtaaaagagcacgtaactctaaaagattgtccatcca |
264 |
Q |
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| T |
5214851 |
ttggaatatctccttccaatttgttccctcctagtaaaagaacacgtaactctgatagcttatccatcca |
5214782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 95 - 264
Target Start/End: Complemental strand, 7143293 - 7143124
Alignment:
| Q |
95 |
attccaaatgacaaattttggaagcaagatggtattgaagcactgagcatgttctgcgataggtccatcatgttgatctttgttaaccgacacaattgaa |
194 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||| |||||||||| | |||||||| || ||| ||||||| |||||||||||||||||| |
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| T |
7143293 |
attccaaatgacatattttggaagcaaggtggtattgaagcattgagcatgttttctgataggtctattttgtcgatcttttttaaccgacacaattgaa |
7143194 |
T |
|
| Q |
195 |
ttggaatatctccttccaaattgttccctccaagtaaaagagcacgtaactctaaaagattgtccatcca |
264 |
Q |
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| T |
7143193 |
ttggaatatctccttccaaattgttccttcctaataaaagaacacgtaactctgatagcttatccatcca |
7143124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 95 - 225
Target Start/End: Complemental strand, 5183389 - 5183258
Alignment:
| Q |
95 |
attccaaatgacaaattttggaagcaagatggtattgaagcactgagcatgttctgcgataggtccatcatgttgatctttgtta-accgacacaattga |
193 |
Q |
| |
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||||||||||||| |||||| ||||||||||||||||||||| ||||||||||| | |||| |||||| |||||||||||| ||| | ||||||||||| |
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| T |
5183389 |
attccaaatgacatattttgaaagcaagatggtattgaagcattgagcatgttccgtgataagtccattatgttgatcttttttagaaggacacaattga |
5183290 |
T |
|
| Q |
194 |
attggaatatctccttccaaattgttccctcc |
225 |
Q |
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||||||||||||||||| |||||||||||||| |
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| T |
5183289 |
attggaatatctccttcaaaattgttccctcc |
5183258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 95 - 235
Target Start/End: Complemental strand, 5174053 - 5173913
Alignment:
| Q |
95 |
attccaaatgacaaattttggaagcaagatggtattgaagcactgagcatgttctgcgataggtccatcatgttgatctttgttaaccgacacaattgaa |
194 |
Q |
| |
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||||||||||||| |||||||| ||||||||||||||||||| ||||||||||| | ||||| ||||| |||| ||||||| | |||| ||| ||||||| |
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| T |
5174053 |
attccaaatgacatattttggaggcaagatggtattgaagcattgagcatgttccgtgatagatccattatgtcgatctttttgaaccaacaaaattgaa |
5173954 |
T |
|
| Q |
195 |
ttggaatatctccttccaaattgttccctccaagtaaaaga |
235 |
Q |
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||||||| |||||||| |||||||||||||| | ||||||| |
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| T |
5173953 |
ttggaatttctccttcaaaattgttccctcctaataaaaga |
5173913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 95 - 225
Target Start/End: Original strand, 4841466 - 4841596
Alignment:
| Q |
95 |
attccaaatgacaaattttggaagcaagatggtattgaagcactgagcatgttctgcgataggtccatcatgttgatctttgttaaccgacacaattgaa |
194 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||| ||||||||||| | |||| |||||| ||| |||| ||| ||| |||||||||||| |
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| T |
4841466 |
attccaaatgacatattttggaagcaagatggtattgaagcattgagcatgttccgtgataagtccattatggtgatattttttagatgacacaattgaa |
4841565 |
T |
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| Q |
195 |
ttggaatatctccttccaaattgttccctcc |
225 |
Q |
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||||||| |||||||| |||||||||||||| |
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| T |
4841566 |
ttggaatttctccttcaaaattgttccctcc |
4841596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 95 - 234
Target Start/End: Complemental strand, 5196794 - 5196655
Alignment:
| Q |
95 |
attccaaatgacaaattttggaagcaagatggtattgaagcactgagcatgttctgcgataggtccatcatgttgatctttgttaaccgacacaattgaa |
194 |
Q |
| |
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||||||||| ||| |||| | |||||||||||||| |||||| |||||||||| | |||| |||||| |||||||||||| ||||||||||||| || | |
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| T |
5196794 |
attccaaataacatatttcgaaagcaagatggtatggaagcattgagcatgtttcgtgataagtccattatgttgatcttttttaaccgacacaactgca |
5196695 |
T |
|
| Q |
195 |
ttggaatatctccttccaaattgttccctccaagtaaaag |
234 |
Q |
| |
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||||||| |||||||| |||||||||||||| | |||||| |
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| T |
5196694 |
ttggaatttctccttcaaaattgttccctcctaataaaag |
5196655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 5203597 - 5203556
Alignment:
| Q |
130 |
tgaagcactgagcatgttctgcgataggtccatcatgttgat |
171 |
Q |
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||||||| ||||||||||| | |||||||||||||||||||| |
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| T |
5203597 |
tgaagcattgagcatgttccgtgataggtccatcatgttgat |
5203556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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