View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8266_high_7 (Length: 420)
Name: NF8266_high_7
Description: NF8266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8266_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 18 - 418
Target Start/End: Complemental strand, 56402163 - 56401763
Alignment:
| Q |
18 |
gatctaagtctcacttctgtgttgggtggcattcgctacaaaatatgaattctccaaagaaagcttatcatacaaattatgcaggcaagaggcataaaag |
117 |
Q |
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| T |
56402163 |
gatctaagtctcacttctgtgttgggaggcattcgctacaaaatatgaattctccaaataaagcttatcatacaaattatgcaggcaagaggcataaaag |
56402064 |
T |
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| Q |
118 |
cttaacagtgttcagtgtgcaataacatgaaattacatctaaaacgcataaaaacattatctaaagacacaaggatcaaagttctcttttccccttgaac |
217 |
Q |
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| T |
56402063 |
cttaacagagttcagtgtgcaataacatgaaattacatctaaaacgcataaaaacattatctaaagacacaaggatcaaagttctcttttccccttgaac |
56401964 |
T |
|
| Q |
218 |
aaagcatatttttcagctgcaactaagaagtatcaaaaggatgaaaattataaaagaaacattcaacggtcttgtaggtatactagccagtggccaatac |
317 |
Q |
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| T |
56401963 |
aaagcatatttttcagctgcaactaagaagtatcaaaatgatgaaaattataaaagaaacattcaagggtcttgtaggtatactagccagtggccaatac |
56401864 |
T |
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| Q |
318 |
aactcattcacatcatataatacttgatggttctactttatagtatgatcttagagcacaaaaacacaggtaaagaggacccaaattcaataaaatcaac |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56401863 |
aactcattcacatcatataatacttgatggttctactttatagtatgatctcagagcacaaaaacacaggtaaagaggacccaaattcaataaaatcaac |
56401764 |
T |
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| Q |
418 |
t |
418 |
Q |
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| T |
56401763 |
t |
56401763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 277
Target Start/End: Original strand, 11319332 - 11319416
Alignment:
| Q |
192 |
atcaaagttctcttttccccttgaacaaagcatatttttcagctgcaactaagaagtatcaaaaggatgaaaattataaaagaaac |
277 |
Q |
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| T |
11319332 |
atcagagttctattttcccat-gaacaaagcatacatttcagctgcaactaagaaacatcaaaatgaagaaaactatagaagaaac |
11319416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 277
Target Start/End: Original strand, 11477353 - 11477437
Alignment:
| Q |
192 |
atcaaagttctcttttccccttgaacaaagcatatttttcagctgcaactaagaagtatcaaaaggatgaaaattataaaagaaac |
277 |
Q |
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| T |
11477353 |
atcagagttctattttcccat-gaacaaagcatacatttcagctgcaactaagaaacatcaaaatgaagaaaactatagaagaaac |
11477437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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