View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8266_low_1 (Length: 681)

Name: NF8266_low_1
Description: NF8266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8266_low_1
NF8266_low_1
[»] chr1 (4 HSPs)
chr1 (76-678)||(10011437-10012028)
chr1 (6-84)||(10011331-10011409)
chr1 (638-681)||(29836248-29836291)
chr1 (492-544)||(39076149-39076201)
[»] chr5 (3 HSPs)
chr5 (635-681)||(4077847-4077893)
chr5 (636-681)||(40946719-40946764)
chr5 (635-681)||(16352147-16352193)
[»] chr4 (2 HSPs)
chr4 (423-528)||(11215021-11215127)
chr4 (423-528)||(11225532-11225638)
[»] chr3 (2 HSPs)
chr3 (638-681)||(29129139-29129182)
chr3 (650-678)||(44712575-44712603)
[»] chr7 (1 HSPs)
chr7 (635-681)||(24759483-24759529)
[»] chr8 (1 HSPs)
chr8 (636-681)||(26955421-26955466)
[»] chr2 (2 HSPs)
chr2 (609-681)||(4768487-4768559)
chr2 (637-681)||(26449102-26449146)


Alignment Details
Target: chr1 (Bit Score: 511; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 76 - 678
Target Start/End: Original strand, 10011437 - 10012028
Alignment:
Q  76 ggtgttcattgaatcgatccaaaacatgtcgtaaatttcgttgttgatgaaggttgatgaaagattctggcggagaacatgcagctatggagatggcatt 175  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||    
T  10011437 ggtgatcattgaatcgatccaaaacatgtcgtaaatttcgttgttgatgaa----------agattctggcggagaacatgcagctatggagatggcatt 10011526  T
Q  176 gaagagttggatggatactgtgttgttgaaccaagggaagagagcactgtgattcctaaagttagcatgggaagaagagctagaatnnnnnnngttatga 275  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  10011527 gaagagttggatggatactgtgctgttgaaccaagggaagagagcactgtgattcctaaagttagcatgggaagaagagctagaataaaaaaagttatga 10011626  T
Q  276 tagatgctggtttagtgtgtgaacatgcgtgggaaatagatcagctgcatgttttccatatagtacaccaaggtacattattaattgtggtaagaaagca 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  10011627 tagatgctggtttagtgtgtgaacatgcgtgggaaatagatcagctgcatgttttccatatagtacaccaaggta-attattaattgtggtaagaaagca 10011725  T
Q  376 acgtctgaaggtctatatgtgagccatggagaatataaatggtttttggatgtattgagtgtttactgactcatggttagtaacatccatatataggcat 475  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10011726 acgtctgaaggtctatatgtgagccatggagaatataaatggtttttggatgtattgattgtttactgactcatggttagtaacatccatatataggcat 10011825  T
Q  476 agggtgcaggcaaatagtgtatctaggtgcatggaaaatataccgaaataaattctgagtgggaaggcttagagttttgtcattccaagacacttcattc 575  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  10011826 agagtgcaggcaaatagtgtatctaggtgcatggaaaatataccgaaataaattctgagtgggaaggcttagagttttgtcattccaagatacttcattc 10011925  T
Q  576 aattaattaaggagggaagagctgatttcgaaatttaaattatttggagccattttgttggattagggttttggaattaggataaacatgtttgctagga 675  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  10011926 aattaattaaggagggaagagctgatttcgaaatttaaattatttggagccattttgttggattagggttttggaattagggtaagcatgtttgctagga 10012025  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 6 - 84
Target Start/End: Original strand, 10011331 - 10011409
Alignment:
Q  6 tggacatcaaattcatatcagtnnnnnnntagaacaccaccacagagcttggatttggacaacaaagaggggtgttcat 84  Q
    ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10011331 tggacatcaaattcatatcagtaaaaaaatagaacaccaccacagagcttggatttggacaacaaagaggggtgttcat 10011409  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 681
Target Start/End: Complemental strand, 29836291 - 29836248
Alignment:
Q  638 ttagggttttggaattaggataaacatgtttgctaggattagat 681  Q
    ||||||||| | ||||||| ||||||||||||||||||||||||    
T  29836291 ttagggtttggcaattagggtaaacatgtttgctaggattagat 29836248  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 492 - 544
Target Start/End: Original strand, 39076149 - 39076201
Alignment:
Q  492 gtgtatctaggtgcatggaaaatataccgaaataaattctgagtgggaaggct 544  Q
    ||||| |||||||||||||||| | ||| | |||||||||||||| |||||||    
T  39076149 gtgtacctaggtgcatggaaaacaaaccaacataaattctgagtgagaaggct 39076201  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 635 - 681
Target Start/End: Complemental strand, 4077893 - 4077847
Alignment:
Q  635 ggattagggttttggaattaggataaacatgtttgctaggattagat 681  Q
    |||||||||||| | ||||||||||| ||||||||||||||||||||    
T  4077893 ggattagggtttggcaattaggataagcatgtttgctaggattagat 4077847  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 636 - 681
Target Start/End: Complemental strand, 40946764 - 40946719
Alignment:
Q  636 gattagggttttggaattaggataaacatgtttgctaggattagat 681  Q
    ||||||||||| | ||||||| ||||||||||||||||||||||||    
T  40946764 gattagggtttggcaattagggtaaacatgtttgctaggattagat 40946719  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 635 - 681
Target Start/End: Original strand, 16352147 - 16352193
Alignment:
Q  635 ggattagggttttggaattaggataaacatgtttgctaggattagat 681  Q
    |||||||||||| | ||||||| ||| ||||||||||||||||||||    
T  16352147 ggattagggtttggcaattagggtaagcatgtttgctaggattagat 16352193  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 528
Target Start/End: Complemental strand, 11215127 - 11215021
Alignment:
Q  423 ggatgtattgagtgtttactgactcatggttagtaacatccatatataggcatagggtgcaggcaaata-gtgtatctaggtgcatggaaaatataccga 521  Q
    |||||| ||||||  ||||||||| ||||||| |||||||| ||||||||||||    ||| ||||| | |||||  ||||||||||||||||||| ||     
T  11215127 ggatgttttgagtaattactgactgatggttattaacatccttatataggcataattagcatgcaaaaacgtgtacataggtgcatggaaaatataacgt 11215028  T
Q  522 aataaat 528  Q
    |||||||    
T  11215027 aataaat 11215021  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 423 - 528
Target Start/End: Complemental strand, 11225638 - 11225532
Alignment:
Q  423 ggatgtattgagtgtttactgactcatggttagtaacatccatatataggcatagggtgcaggcaaata-gtgtatctaggtgcatggaaaatataccga 521  Q
    |||||| ||||||  ||||||||| ||||||| |||||||| ||||||||||||    ||| ||||| | |||||  ||||||||||||||||||| ||     
T  11225638 ggatgttttgagtaattactgactgatggttattaacatccttatataggcataattagcatgcaaaaacgtgtacataggtgcatggaaaatataacgt 11225539  T
Q  522 aataaat 528  Q
    |||||||    
T  11225538 aataaat 11225532  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 681
Target Start/End: Complemental strand, 29129182 - 29129139
Alignment:
Q  638 ttagggttttggaattaggataaacatgtttgctaggattagat 681  Q
    ||||||||| | ||||||| ||||||||||||||||||||||||    
T  29129182 ttagggtttggcaattagggtaaacatgtttgctaggattagat 29129139  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 650 - 678
Target Start/End: Original strand, 44712575 - 44712603
Alignment:
Q  650 aattaggataaacatgtttgctaggatta 678  Q
    |||||||||||||||||||||||||||||    
T  44712575 aattaggataaacatgtttgctaggatta 44712603  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 635 - 681
Target Start/End: Complemental strand, 24759529 - 24759483
Alignment:
Q  635 ggattagggttttggaattaggataaacatgtttgctaggattagat 681  Q
    |||||||||||  | ||||||| ||||||||||||||||||||||||    
T  24759529 ggattagggttaagaaattagggtaaacatgtttgctaggattagat 24759483  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 636 - 681
Target Start/End: Complemental strand, 26955466 - 26955421
Alignment:
Q  636 gattagggttttggaattaggataaacatgtttgctaggattagat 681  Q
    ||||||||||| | ||||||| |||||||||||||||| |||||||    
T  26955466 gattagggtttggcaattagggtaaacatgtttgctagaattagat 26955421  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 609 - 681
Target Start/End: Complemental strand, 4768559 - 4768487
Alignment:
Q  609 tttaaattatttggagccattttgtt-ggattagggttttggaattaggataaacatgtttgctaggattagat 681  Q
    |||||||| |||||||||||||| || || |||||||||   ||||||||||| ||||||||||| ||||||||    
T  4768559 tttaaatt-tttggagccatttttttaggtttagggtttgacaattaggataagcatgtttgctaagattagat 4768487  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 637 - 681
Target Start/End: Complemental strand, 26449146 - 26449102
Alignment:
Q  637 attagggttttggaattaggataaacatgtttgctaggattagat 681  Q
    |||||||||| | ||||||| ||| ||||||||||||||||||||    
T  26449146 attagggtttggcaattagggtaagcatgtttgctaggattagat 26449102  T

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