View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8266_low_10 (Length: 367)
Name: NF8266_low_10
Description: NF8266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8266_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 8255193 - 8255541
Alignment:
| Q |
1 |
atgctttgctcaaatgatacaagatttaatatttggactaaaaaattattttcaacttgtaggcttcaaagttgtagatcgagggtgttgtggcacaggc |
100 |
Q |
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| T |
8255193 |
atgctttgctcaaatgattcaagatttaatatttggactaaaaaattatttt--acttgtaggcttcaaagttgtagatcgagggtgttgcggcacaggc |
8255290 |
T |
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| Q |
101 |
gaaattgaagttannnnnnnatgcaaccatttggaacccacttgtgtcaacgactcggattatgtgttttgggatgcttttcatcctactgaagccgttt |
200 |
Q |
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| T |
8255291 |
gaaatcgaagttatttttttatgcaaccatttggaacccacttgtgtcaacgactcggattatgtgttttgggatgcttttcatcctactgaagccgttt |
8255390 |
T |
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| Q |
201 |
acaaaatacttgttgccctaagtctacaaaaatacatgtacaactttatttagctatacaaaatgttatttgttattttgtttnnnnnnnntattgtttt |
300 |
Q |
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| T |
8255391 |
acaaaatacttgttgccctaagtctacaaaaatacatgtacaactttatttagctatacaaaatgttatttgttattttgtttaaaaaaaaaattgtttt |
8255490 |
T |
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| Q |
301 |
tactttttatttgaagaattcatttttaattatctatatgtagcttgttgt |
351 |
Q |
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| T |
8255491 |
tactttttatttgaagaattcatttttaattatctatatgtagcttgttgt |
8255541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 2 - 164
Target Start/End: Original strand, 31243473 - 31243634
Alignment:
| Q |
2 |
tgctttgctcaaatgatacaagatttaatatttggactaaaaaattattttcaacttgtaggcttcaaagttgtagatcgagggtgttgtggcacaggcg |
101 |
Q |
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| T |
31243473 |
tgcttttctcaattgatggaagatttaatatttggacaaaaaaatc-ttgtaaacttctaggctttaaagttgtagatcgagggtgttgtggcacatgca |
31243571 |
T |
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| Q |
102 |
aaattgaagttannnnnnnatgcaaccatttggaacccacttgtgtcaacgactcggattatg |
164 |
Q |
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| T |
31243572 |
aaattgaagttatttttttatgcaaccatttggaacccacttgtgccaacgattcggactatg |
31243634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 218
Target Start/End: Original strand, 8245716 - 8245894
Alignment:
| Q |
40 |
aaaaaattattttcaacttgtaggcttcaaagttgtagatcgagggtgttgtggcacaggcgaaattgaagttannnnnnnatgcaaccatttggaaccc |
139 |
Q |
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| T |
8245716 |
aaaaaaatattttcaacttgtagggtatgaagttggagacagaggatgttgtggcactggcacactagaagttacttatttatgcaaccatttgcaaccc |
8245815 |
T |
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| Q |
140 |
acttgtgtcaacgactcggattatgtgttttgggatgcttttcatcctactgaagccgtttacaaaatacttgttgccc |
218 |
Q |
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| T |
8245816 |
acttgtcccaacgatttggattatgtgttttgggacagttttcaccctactgaatctgtttacagaaaacttgttgccc |
8245894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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