View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8266_low_11 (Length: 366)
Name: NF8266_low_11
Description: NF8266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8266_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 19 - 336
Target Start/End: Complemental strand, 6216060 - 6215744
Alignment:
| Q |
19 |
taaaggacatatatccctcatgcaccagtgttatattttaatatatagtatttggctttatatactttagttaaaataaaaaatttctaaaacctctttt |
118 |
Q |
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| T |
6216060 |
taaaggacatatatccctcatgcactagtgttatattttaatatatagtatttggctttatatactttagttaaaataaaaaatttctaaaacctctttt |
6215961 |
T |
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| Q |
119 |
atgcttttcttggcacatgcatgattaacacaacatgaatttccaattctatccttgacacattctcttagaaccatacataccataaaattttcacctt |
218 |
Q |
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| T |
6215960 |
atgcttta-ttggcacatgcatgattaacacaacatgaatttccaattctatccttgacacattctcttagaaccatacataccataaaattttcacctt |
6215862 |
T |
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| Q |
219 |
aaattaatttctgtttataaccatttacatattatcttgatcaatacaaaaaacctgactcaatgacaggcatgctaaagttacctttatattattataa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6215861 |
aaattaatttctgtttataaccatttacatattatcttgatcaatacaaaaaacctgactcaatgacaggcatgctaaagttacctttatattattataa |
6215762 |
T |
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| Q |
319 |
catattcatgaacctgtc |
336 |
Q |
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|||||||||||||||||| |
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| T |
6215761 |
catattcatgaacctgtc |
6215744 |
T |
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