View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8266_low_12 (Length: 348)
Name: NF8266_low_12
Description: NF8266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8266_low_12 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 16 - 342
Target Start/End: Original strand, 33931365 - 33931691
Alignment:
| Q |
16 |
ataacatatcactgcatcattactgtgaattcatcaaagctaagcaaaccatccccatccaaatcaaaatgtttaatcatagctttacattcatcaatag |
115 |
Q |
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||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33931365 |
ataacatatcactgcatcattgttatgaattcatcaaagctaagcaaaccatccccatccaaatcaaaatgtttaatcatagctttacattcatcaatag |
33931464 |
T |
|
| Q |
116 |
acttagactcacccatcttcttaagcatcctcttcaaactcttaggtgttataaaaccacacttctcactatcatacatctcaaatgcttctctcaaatc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33931465 |
acttagactcacccatcttcttaagcatcctcttcaaactctttggtgttataaaaccacacttctcactatcatacatctcaaatgcttctctcaaatc |
33931564 |
T |
|
| Q |
216 |
tttcaacttttgttcctctccaccttcctccatcaaagcaattaattcctccaaactcaaataaccatcaccatctgaatccatcgcttcaatagccatt |
315 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33931565 |
cttcaacttttgttcctctccaccttcttccatcaaagcaattaattcctccaaactcaaataaccatcaccatctgaatccattgcttcaatagccatt |
33931664 |
T |
|
| Q |
316 |
tcagcttctttcaataaaatctcttct |
342 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
33931665 |
tcagcttctttcaataaaatctcttct |
33931691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 23 - 342
Target Start/End: Original strand, 33938177 - 33938496
Alignment:
| Q |
23 |
atcactgcatcattactgtgaattcatcaaagctaagcaaaccatccccatccaaatcaaaatgtttaatcatagctttacattcatcaatagacttaga |
122 |
Q |
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|
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33938177 |
atcactgcatcattgttatgaattcatcaaagctaagcaaaccatccccatccaaatcaaaatgtttaatcatagctttacattcatcaatagacttaga |
33938276 |
T |
|
| Q |
123 |
ctcacccatcttcttaagcatcctcttcaaactcttaggtgttataaaaccacacttctcactatcatacatctcaaatgcttctctcaaatctttcaac |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33938277 |
ctcacccatcttcttaagcatcctcttcaaactctttggtgttataaaaccacacttctcactatcatacatctcaaatgcttctctcaaatccttcaac |
33938376 |
T |
|
| Q |
223 |
ttttgttcctctccaccttcctccatcaaagcaattaattcctccaaactcaaataaccatcaccatctgaatccatcgcttcaatagccatttcagctt |
322 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33938377 |
ttttgttcctctccaccttcttccatcaaagcaattaattcctccaaactcaaataaccatcaccatctgaatccattgcttcaatagccatttcagctt |
33938476 |
T |
|
| Q |
323 |
ctttcaataaaatctcttct |
342 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
33938477 |
ctttcaataaaatctcttct |
33938496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 24 - 330
Target Start/End: Original strand, 42839791 - 42840097
Alignment:
| Q |
24 |
tcactgcatcattactgtgaattcatcaaagctaagcaaaccatccccatccaaatcaaaatgtttaatcatagctttacattcatcaatagacttagac |
123 |
Q |
| |
|
||||| |||||| | | |||| || ||||| ||||||| |||||| |||||||||||||| ||||||||| |||||||||| ||||| |||||||| |
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| T |
42839791 |
tcactccatcatgattctgaactcttcaaaactaagcacaccatcaccatccaaatcaaatcttttaatcatcactttacattcttcaatggacttagaa |
42839890 |
T |
|
| Q |
124 |
tcacccatcttcttaagcatcctcttcaaactcttaggtgttataaaaccacacttctcactatcatacatctcaaatgcttctctcaaatctttcaact |
223 |
Q |
| |
|
|| |||| ||| || | |||||||||||||||||| |||||||| | |||||| ||| ||||||||| ||||| ||||| |||||||| ||||| | |
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| T |
42839891 |
tcccccaactttttcaacatcctcttcaaactctttggtgttatgtacccacacccttcatcatcatacatttcaaaagcttccctcaaatccttcaatt |
42839990 |
T |
|
| Q |
224 |
tttgttcctctccaccttcctccatcaaagcaattaattcctccaaactcaaataaccatcaccatctgaatccatcgcttcaatagccatttcagcttc |
323 |
Q |
| |
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||| ||||||||| ||| ||||| | || || || |||||||||||||| | ||||||||||| ||||||| || |||||||| || || |||| |
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| T |
42839991 |
tttcttcctctccccctgattccattagcgctatcaaatcctccaaactcaataacccatcaccatcagaatccaatgcctcaatagcaatctccacttc |
42840090 |
T |
|
| Q |
324 |
tttcaat |
330 |
Q |
| |
|
||||||| |
|
|
| T |
42840091 |
tttcaat |
42840097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 41 - 330
Target Start/End: Original strand, 42846616 - 42846905
Alignment:
| Q |
41 |
tgaattcatcaaagctaagcaaaccatccccatccaaatcaaaatgtttaatcatagctttacattcatcaatagacttagactcacccatcttcttaag |
140 |
Q |
| |
|
||||||| ||||| ||||||| |||||| |||||||||||||| ||||||||| ||| ||||| ||||| |||||||| || |||| || || | |
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| T |
42846616 |
tgaattcttcaaaactaagcacaccatcaccatccaaatcaaatcttttaatcatcaatttgcattcttcaatggacttagaatcccccagttttttcaa |
42846715 |
T |
|
| Q |
141 |
catcctcttcaaactcttaggtgttataaaaccacacttctcactatcatacatctcaaatgcttctctcaaatctttcaacttttgttcctctccacct |
240 |
Q |
| |
|
||||||||||||||| || || ||||| || ||||| ||| |||||||||| ||||| ||||| |||||||| ||||| |||| |||||||| ||| |
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| T |
42846716 |
catcctcttcaaactttttggcgttatgaatccacatccttcattatcatacatttcaaaagcttccctcaaatccttcaatttttcctcctctccccct |
42846815 |
T |
|
| Q |
241 |
tcctccatcaaagcaattaattcctccaaactcaaataaccatcaccatctgaatccatcgcttcaatagccatttcagcttctttcaat |
330 |
Q |
| |
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||||| || | ||| || || |||||||||| | ||||||||||| ||||||| || |||||||| |||||| ||||||||||| |
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| T |
42846816 |
gattccattaacgtaatcaaatctcccaaactcaataacccatcaccatcagaatccaatgcctcaatagcaatttcaacttctttcaat |
42846905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 330
Target Start/End: Original strand, 42849603 - 42849892
Alignment:
| Q |
41 |
tgaattcatcaaagctaagcaaaccatccccatccaaatcaaaatgtttaatcatagctttacattcatcaatagacttagactcacccatcttcttaag |
140 |
Q |
| |
|
||||||| ||||| ||||||| |||||| |||||||||||||| ||||||||| ||| ||||| ||||| |||||||| || |||| || || | |
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|
| T |
42849603 |
tgaattcttcaaaactaagcacaccatcaccatccaaatcaaatcttttaatcatcaatttgcattcttcaatggacttagaatcccccagttttttcaa |
42849702 |
T |
|
| Q |
141 |
catcctcttcaaactcttaggtgttataaaaccacacttctcactatcatacatctcaaatgcttctctcaaatctttcaacttttgttcctctccacct |
240 |
Q |
| |
|
||||||||||||||| || |||||||| || ||||| ||| |||||||||| ||||| ||||| |||||||| ||||| |||| ||||||||| ||| |
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|
| T |
42849703 |
catcctcttcaaactttttggtgttatgaatccacatccttcattatcatacatttcaaaagcttccctcaaatccttcaatttttcttcctctccccct |
42849802 |
T |
|
| Q |
241 |
tcctccatcaaagcaattaattcctccaaactcaaataaccatcaccatctgaatccatcgcttcaatagccatttcagcttctttcaat |
330 |
Q |
| |
|
||||| | || || |||||||||||||| | ||||||||||| ||||||| || ||||| || ||||| ||||||||||| |
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|
| T |
42849803 |
gattccataagctttatcaaatcctccaaactcaataatccatcaccatcagaatccaatgcctcaattgcaatttccacttctttcaat |
42849892 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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