View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8266_low_25 (Length: 236)
Name: NF8266_low_25
Description: NF8266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8266_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 28209178 - 28208952
Alignment:
| Q |
1 |
tttgtatgtacagtaattttatgtttcatgcttgtggtgtgtactttttcatatccacatccataataaggacattcatttactatgagc---------- |
90 |
Q |
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| T |
28209178 |
tttgtatgtacagtaattttatgtttcatgcttgtggtgtgtactttttcatatccacatccataacaaggacattcatttactatgagctttttggttg |
28209079 |
T |
|
| Q |
91 |
-aaatagtcataacatgatttcaaaacaattgacaatattcacatttttgtcatgtcttgatgtttaatttaaggaattgatcatgttttgatgttttgc |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
28209078 |
caaatagtcataacatgatttcaaaacaattgacaatattcacatttttgtcatgtcttgatgtttaatttaaggaattgatcatgt--------tttgc |
28208987 |
T |
|
| Q |
190 |
acgacatataatttatacatgtacgtgatgttttt |
224 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
28208986 |
acgacatataatttatacatgtacgtgatgttttt |
28208952 |
T |
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