View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8266_low_3 (Length: 535)
Name: NF8266_low_3
Description: NF8266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8266_low_3 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 1 - 535
Target Start/End: Complemental strand, 23333837 - 23333303
Alignment:
| Q |
1 |
aagttgaccgataaaattgtgtgccagaatgcagctgaagcagtactcccccaaagaggttgataagtttgttttatgtaattttttgctgttttgatat |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333837 |
aagttgaccgataaaattgtgtgccggaatgcagctgaagcagtactccccccaagaggttgataagtttgttttatgtaattttttgctgttttgatat |
23333738 |
T |
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| Q |
101 |
attgtgtcatgatttaccaggaaaaatgtacacattgtcgttacctcaggaactgttgttcgtgttgctgatgagctttcccttcaagagatgcgattgc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333737 |
attgtgtcatgatttaccaggaaaaatgtacacattgtcgttgcctcaggaactgttgttcgtgttgctgatgagctttcccttcaagagatgcgattgc |
23333638 |
T |
|
| Q |
201 |
tgaatacatattatgcagagcttgagaccgcaactgtaagtgattttttatatgtcaactgctttctgatgaaacaatcattataatatgctgaattacg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
23333637 |
tgaatacatattatgcagagcttgagaccgcaactgtaagtgattttttatatgtcaactgctttctgatggaacaatcattataatatgctgacttacg |
23333538 |
T |
|
| Q |
301 |
ttggacaaaatccctaattcaaatgatttcgttggcttgcttaatgtcgtcattacgaagatgcgcacgacagggcataagataaattgcgaacatttta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23333537 |
ttggacaaaatccctaattcaaatgatttcgttggcttgcttaatgtcgtcattacgaagatgcgcacgatggggcataagataaattgcgaacatttta |
23333438 |
T |
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| Q |
401 |
ggagtttgcctctagctatgtgtaatactcccaaaaagtataacaaatttgcaaccagtgtggtggattctttttggactgccgtattttttcttatgga |
500 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
23333437 |
ggagtttgcctctagctatgtgtaatactcccaaaaggtataacaaatttgcaaccagtgtggtggattctttttggactgctgtattttttcttatgga |
23333338 |
T |
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| Q |
501 |
gtctttctatcttgaccattaaaattaagctgagc |
535 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
23333337 |
gtctttctgtcttgaccattaaaattaagctgagc |
23333303 |
T |
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