View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8266_low_4 (Length: 496)
Name: NF8266_low_4
Description: NF8266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8266_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 318 - 481
Target Start/End: Complemental strand, 9131047 - 9130884
Alignment:
| Q |
318 |
ttattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttcttt |
417 |
Q |
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| T |
9131047 |
ttattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttcttt |
9130948 |
T |
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| Q |
418 |
ggaaggctaggaatgaaaagatcgtcaagaatttggctagagattgtgaggatattgtggatga |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9130947 |
ggaaggctaggaatgaaaagatcgtcaagaatttggctagagattgtgaggatattgtggatga |
9130884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 318 - 464
Target Start/End: Complemental strand, 9122940 - 9122794
Alignment:
| Q |
318 |
ttattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttcttt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9122940 |
ttattagaccaagtagtttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttcttt |
9122841 |
T |
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| Q |
418 |
ggaaggctaggaatgaaaagatcgtcaagaatttggctagagattgt |
464 |
Q |
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| T |
9122840 |
ggaaggctaggaatgaaaagatcgtcaagaatttggctagagattgt |
9122794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 9123302 - 9123100
Alignment:
| Q |
15 |
cagagattgggaagaaggagaaattatcattctcgattaattagctttttatcgataggaatgattgcagctgattgtaatgcatgtattataggaagga |
114 |
Q |
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| T |
9123302 |
cagagattgggaagaaggagaaattatcattctcgattaattagctttttatatttaggaatgactgcagctgattgtaatgtat-tatcaaaggaagga |
9123204 |
T |
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| Q |
115 |
actgtcatgtaagaaattatattcatattcaatatatataatgaaattttatccactcattattcctcaattacttgtctggtttatttatcactgccaa |
214 |
Q |
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||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||| |
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| T |
9123203 |
act-tcatgtaagaatttatattcatattcaatatatataatgaaattttatccactcattattcctcaattgcttgtctggtttctttattactgccaa |
9123105 |
T |
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| Q |
215 |
cgtct |
219 |
Q |
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||||| |
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| T |
9123104 |
cgtct |
9123100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 15 - 219
Target Start/End: Complemental strand, 9131409 - 9131207
Alignment:
| Q |
15 |
cagagattgggaagaaggagaaattatcattctcgattaattagctttttatcgataggaatgattgcagctgattgtaatgcatgtattataggaagga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || ||| | |||||||| |
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| T |
9131409 |
cagagattgggaagaaggagaaattatcattctcgattaattagctttttatatttaggaatgactgcagctgattgtaatgtat-tatcaaaggaagga |
9131311 |
T |
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| Q |
115 |
actgtcatgtaagaaattatattcatattcaatatatataatgaaattttatccactcattattcctcaattacttgtctggtttatttatcactgccaa |
214 |
Q |
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||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||| |
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| T |
9131310 |
act-tcatgtaagaatttatattcatattcaatatatataatgaaattttatccactcattattcctcaattgcttgtctggtttctttattactgccaa |
9131212 |
T |
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| Q |
215 |
cgtct |
219 |
Q |
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||||| |
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| T |
9131211 |
cgtct |
9131207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 9123089 - 9123039
Alignment:
| Q |
269 |
attatcagttactcttgtagatattactgccaatgtctttatttgatgttt |
319 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
9123089 |
attatcagttactcttatagttattactgccaatgtctttatttgatgttt |
9123039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 269 - 319
Target Start/End: Complemental strand, 9131196 - 9131146
Alignment:
| Q |
269 |
attatcagttactcttgtagatattactgccaatgtctttatttgatgttt |
319 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
9131196 |
attatcagttactcttatagttattactgccaatgtctttatttgatgttt |
9131146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 334 - 481
Target Start/End: Complemental strand, 24524885 - 24524738
Alignment:
| Q |
334 |
tttgtttttgcaactagaaaggttcattggtgatatcaaagaggggttattggttaatatggcactccgttatttgggttctttggaaggctaggaatga |
433 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24524885 |
tttgtttttgcaactagaaaggttcattgctgatatcaaagaggggttattggttaatatggcactccgttatttgggttctttggaaggctaggaatga |
24524786 |
T |
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| Q |
434 |
aaagatcgtcaagaatttggctagagattgtgaggatattgtggatga |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24524785 |
aaagatcgtcaagaatttggctagagattgtgaggatattgtggatga |
24524738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 24525170 - 24524997
Alignment:
| Q |
15 |
cagagattgggaagaaggagaaattatcattctcgattaattagctttttatcgataggaatgattgcagctgattgtaatgcatgtattat---aggaa |
111 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||| |||||||||||||| ||||| |
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| T |
24525170 |
cagagattgggaagatggagaaattatcattctcgattaattagctttttatctttaggaatgattgtagctaattacaatgcatgtattatcataggaa |
24525071 |
T |
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| Q |
112 |
ggaactgtcatgtaagaaattatattcatattcaatatatataatgaaattttatccactcattattcctcaatt |
186 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24525070 |
ggaact-tcatgtaagaaattatattcatattcaatatatataatgaaattttatccactcattattcctcaatt |
24524997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 231 - 281
Target Start/End: Complemental strand, 24524967 - 24524921
Alignment:
| Q |
231 |
atatcaagtcactgcaactcatactatatagatggtcaattatcagttact |
281 |
Q |
| |
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|||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24524967 |
atatgaagtcactgcaactcata----atagatggtcaattatcagttact |
24524921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 371 - 481
Target Start/End: Complemental strand, 10323301 - 10323190
Alignment:
| Q |
371 |
aaagaggggttattggttaatatggcactccgttatttgggttctttggaaggctaggaatg-aaaagatcgtcaagaatttggctagagattgtgagga |
469 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||| ||| ||| |||| |||||||||||||||||| |||| |
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| T |
10323301 |
aaagaggggttattggttaatttggcactccgttattttggttctttggaaggctagaaatgcgaaaaatcatcaacaatttggctagagattgtaagga |
10323202 |
T |
|
| Q |
470 |
tattgtggatga |
481 |
Q |
| |
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|||||||||||| |
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| T |
10323201 |
tattgtggatga |
10323190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 9039033 - 9039096
Alignment:
| Q |
20 |
attgggaagaaggagaaattatcattctcgattaattagctttttatcgataggaatgattgca |
83 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||| |
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| T |
9039033 |
attgggaagaaggagaaattatcattctcgattaattagttttttatctttaggaatgactgca |
9039096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 39815109 - 39815150
Alignment:
| Q |
25 |
gaagaaggagaaattatcattctcgattaattagctttttat |
66 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39815109 |
gaagaaggagaagttatcattctcgattaattagctttttat |
39815150 |
T |
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