View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8266_low_5 (Length: 463)
Name: NF8266_low_5
Description: NF8266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8266_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 13 - 349
Target Start/End: Original strand, 13871205 - 13871558
Alignment:
| Q |
13 |
atcaacacttttgtcattccactcgtgagcggccaaatatcgcttatcaatcggcacatatggcacatgttttttggcctaccaataaagtcaacacttg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13871205 |
atcaacacttttgtcattccactcgtgagcggccaaatatcgcttatcaatcggcgcatatggcacatgttttttggcctaccaataaagtcaacacttg |
13871304 |
T |
|
| Q |
113 |
ttaacaaataacacataatctatgataacgaatttagacaataagtgttaagtttttacataacatctccggtgctgcaatgatatgagactctgtgatg |
212 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13871305 |
ttgacaaataacacataatctatgataacgaatttggacaataagtgttaagtttttacataacatctccggtgccgcaatgatatgagactctgtgatg |
13871404 |
T |
|
| Q |
213 |
tagaccctttggaagtgtgtactttcccaatgggtaacaagatcagccatacctactcatctat-----------------ccttcttcctcgccttcgt |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||| ||| | |
|
|
| T |
13871405 |
tagaccctttggaagtgtgtactttcccaatgggtaacaagatcagccatgcctgctcatctatccaaccagggctgacccccttcttcctcgctttcat |
13871504 |
T |
|
| Q |
296 |
atgtataagataatttgtgcatctcttcttaaatgcgttatagacaagctcatg |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13871505 |
atgtataagataatttgtgcatctcttcttaaatgcgttatagacaagctcatg |
13871558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 13 - 349
Target Start/End: Original strand, 14011330 - 14011683
Alignment:
| Q |
13 |
atcaacacttttgtcattccactcgtgagcggccaaatatcgcttatcaatcggcacatatggcacatgttttttggcctaccaataaagtcaacacttg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14011330 |
atcaacacttttgtcattccactcgtgagcggccaaatatcgcttatcaatcggcgcatatggcacatgttttttggcctaccaataaagtcaacacttg |
14011429 |
T |
|
| Q |
113 |
ttaacaaataacacataatctatgataacgaatttagacaataagtgttaagtttttacataacatctccggtgctgcaatgatatgagactctgtgatg |
212 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14011430 |
ttgacaaataacacataatctatgataacgaatttggacaataagtgttaagtttttacataacatctccggtgccgcaatgatatgagactctgtgatg |
14011529 |
T |
|
| Q |
213 |
tagaccctttggaagtgtgtactttcccaatgggtaacaagatcagccatacctactcatctat-----------------ccttcttcctcgccttcgt |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||| ||| | |
|
|
| T |
14011530 |
tagaccctttggaagtgtgtactttcccaatgggtaacaagatcagccatgcctgctcatctatccaaccagggctgacccccttcttcctcgctttcat |
14011629 |
T |
|
| Q |
296 |
atgtataagataatttgtgcatctcttcttaaatgcgttatagacaagctcatg |
349 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14011630 |
atgtataagataatttgtgcatctcttcttaaatgcgttatagacaagctcatg |
14011683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 351 - 413
Target Start/End: Original strand, 13872057 - 13872119
Alignment:
| Q |
351 |
tgatcatgattttcctccatttgtagaggccgttgcggcatagattcttgtatttgaggctca |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13872057 |
tgatcatgattttcctccatttgtagaggccgttgcggcatagattcttgtatttgaggctca |
13872119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 351 - 413
Target Start/End: Original strand, 14012182 - 14012244
Alignment:
| Q |
351 |
tgatcatgattttcctccatttgtagaggccgttgcggcatagattcttgtatttgaggctca |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14012182 |
tgatcatgattttcctccatttgtagaggccgttgcggcatagattcttgtatttgaggctca |
14012244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University