View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8266_low_6 (Length: 456)
Name: NF8266_low_6
Description: NF8266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8266_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Original strand, 42125763 - 42126203
Alignment:
| Q |
1 |
aaacatggtagcatatgcagtaatagtgaatggaatccaatgaaaggcaccacatatgcaaacaaatgaaaagctttggattgaagcaggtttttggaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42125763 |
aaacatggtagcatatgcagtaatagtgaatggaatccaatgaaaggcaccacatatgcaaacaaatgaaaagctttggattgaagcaggtttttggaag |
42125862 |
T |
|
| Q |
101 |
aaccatgtatacatgaagtaagtaatagctgcagcaagggaactaacaaaggcaacaagataaatcccaagaaaatggtatatagcatcagactcggttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42125863 |
aaccatgtatacatgaagtaagtaatagctgcagcaagggaactaacaaaggcaacaagataaatcccaagaaaatggtatatagcatcagactcggttt |
42125962 |
T |
|
| Q |
201 |
tggtcatggtaacaagcaacactgcattctgaaaccaaagaaaaaataaataaatatcaatttctgttataaatttaatatatcgtgactcgtggagaat |
300 |
Q |
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| T |
42125963 |
tggtcatagtaacaagcaacactgcattctgaaaccaaagaaaaaataaataaatatcaatttctgttataaatttaatagatcgtgactcgtggacaat |
42126062 |
T |
|
| Q |
301 |
tattaattatagacatgatttttgactcaaaattttgatgtcgactttggtttttgtgtatttttgaaatgtctgtaagttgtagaggatataaagtaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42126063 |
tattaattatagacatgatttttgactcaaaattttgatgtcgactttggtttttgtgtatttttgaaatgtctgtaagttgtagaggatataaagtaaa |
42126162 |
T |
|
| Q |
401 |
agagagatatagataaacacagtgtcacatgcgatgtttgt |
441 |
Q |
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| T |
42126163 |
agagagatatagataaacacagtgtcacatgcgatgtttgt |
42126203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 24929062 - 24929134
Alignment:
| Q |
1 |
aaacatggtagcatatgcagtaatagtgaatggaatccaatgaaaggcaccacatatgcaaacaaatgaaaag |
73 |
Q |
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||||||||||||||||||| | | || ||||| ||||| ||||| ||||||||||||||||||||||||||| |
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| T |
24929062 |
aaacatggtagcatatgcaatgacggtaaatgggatccagtgaaaagcaccacatatgcaaacaaatgaaaag |
24929134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 418
Target Start/End: Complemental strand, 33844221 - 33844149
Alignment:
| Q |
346 |
tttggtttttgtgtatttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaac |
418 |
Q |
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| T |
33844221 |
tttggtttttgtgtatttttgaaatgcatttaagttgtaggagataaatagtaagagagagatagagataaac |
33844149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 421
Target Start/End: Original strand, 36646749 - 36646827
Alignment:
| Q |
345 |
ctttggtttttgtgtatttttgaaatgtct--gtaagttgtagaggatataaagtaaaagagagatatagataaacaca |
421 |
Q |
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| T |
36646749 |
ctttgatttttgtgtattttttaaaaatctaagtaagttgtataaggtaaaaagtaaaagagagatagagataaacaca |
36646827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 351 - 417
Target Start/End: Original strand, 12119845 - 12119911
Alignment:
| Q |
351 |
tttttgtgtatttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaa |
417 |
Q |
| |
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|||||||||||||||||||| | ||||| |||| |||| ||||||| ||||||||||||||||| |
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| T |
12119845 |
tttttgtgtatttttgaaatatgtgtaaccaatagaagataaaaagtaagagagagatatagataaa |
12119911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 419
Target Start/End: Original strand, 20809087 - 20809151
Alignment:
| Q |
355 |
tgtgtatttttgaaatgtctgtaagttgtagaggatataaagtaaaagagagatatagataaaca |
419 |
Q |
| |
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||||||||||| |||||| |||| |||||| | |||| ||||||| ||||||||| |||| |||| |
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| T |
20809087 |
tgtgtattttttaaatgtgtgtatgttgtaaaagataaaaagtaagagagagatagagatgaaca |
20809151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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