View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8266_low_9 (Length: 368)
Name: NF8266_low_9
Description: NF8266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8266_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 27045473 - 27045821
Alignment:
| Q |
1 |
tttcatcaacaaaacctaaatgcttccactcagtcagaatcgttaccgcaccgctaccgtccatgctaaaatcttgcttatgctccgtcttcggagtgtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27045473 |
tttcatcaacaaaacctaaatgcttccactcagtcagaatcgttaccgcaccgctaccgtccatgctaaaatcttgcttatgctccgtctccggagtgtg |
27045572 |
T |
|
| Q |
101 |
atcgatcgagtttttgacataatcagtggaggaagcaatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcacta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27045573 |
atcgatcgagtttttgacataatcagtggaggaagcaatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcacta |
27045672 |
T |
|
| Q |
201 |
acttttaacacaacttttccatccacagtagtattaccataataccctataggcaaaggatcataacctttcatgctgcgtctaataccaactaacatat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27045673 |
acttttaacacaacttttccatccacagtagtattaccataataccctataggcaaaggatcataacctttcatgctgcgtctaataccaactaacatat |
27045772 |
T |
|
| Q |
301 |
tcaacattgtttttccattgttgctaagttgtaaggctcttgctcttga |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27045773 |
tcaacattgtttttccattgttgctaagttgtaaggctcttgctcttga |
27045821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 117 - 349
Target Start/End: Original strand, 27069598 - 27069830
Alignment:
| Q |
117 |
acataatcagtggaggaagcaatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaacttttaacacaactt |
216 |
Q |
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||||||||||||| | ||| ||| ||||||| |||||| |||| ||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| |
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| T |
27069598 |
acataatcagtggtgaaagaaatatttttagtctctttaatcagcttaacaatttcatagagtggcatttcatcgagctcactcacttttaaaacaactt |
27069697 |
T |
|
| Q |
217 |
ttccatccacagtagtattaccataataccctataggcaaaggatcataacctttcatgctgcgtctaataccaactaacatattcaacattgtttttcc |
316 |
Q |
| |
|
|| |||||| |||| ||| || ||||||||| | || |||| |||| || | ||| | | ||||| ||||||||||||||||||| ||||||||| | |
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|
| T |
27069698 |
ttgcatccatggtagaattcccgtaataccctttcggtaaagtatcaaaatccatcaagttacgtctcataccaactaacatattcagcattgttttatc |
27069797 |
T |
|
| Q |
317 |
attgttgctaagttgtaaggctcttgctcttga |
349 |
Q |
| |
|
|||| ||||||| | |||||||||||||||||| |
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|
| T |
27069798 |
attgctgctaagctttaaggctcttgctcttga |
27069830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 108 - 349
Target Start/End: Original strand, 27056480 - 27056721
Alignment:
| Q |
108 |
gagtttttgacataatcagtggaggaagcaatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaactttta |
207 |
Q |
| |
|
|||||| |||||||||||| | ||||||| ||||||| |||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
27056480 |
gagtttgtgacataatcagcaatgaaagcaatatttttagtctctttaatcagcttaacaatttcatagagtggcatttcgttgagctcactcactttta |
27056579 |
T |
|
| Q |
208 |
acacaacttttccatccacagtagtattaccataataccctataggcaaaggatcataacctttcatgctgcgtctaataccaactaacatattcaacat |
307 |
Q |
| |
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| ||||| ||| |||| | ||||| ||| ||||| |||||| |||| |||| ||||||| | | || | ||||||||||||||||| || ||| || |
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| T |
27056580 |
aaacaacatttacatctatagtagaatttccatattaccctttaggtaaagtatcataatcctccaagttgcgtctaataccaactgcaatggtcagcac |
27056679 |
T |
|
| Q |
308 |
tgtttttccattgttgctaagttgtaaggctcttgctcttga |
349 |
Q |
| |
|
||||| |||||| || |||||| |||||||||||||||||| |
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|
| T |
27056680 |
tgtttcaccattgctgttaagttttaaggctcttgctcttga |
27056721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 108 - 349
Target Start/End: Original strand, 27062522 - 27062763
Alignment:
| Q |
108 |
gagtttttgacataatcagtggaggaagcaatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaactttta |
207 |
Q |
| |
|
|||||| | |||||||||| | | ||||||| ||||||| |||||| |||| |||||| |||| ||||||||||||||||| ||| ||||| ||||||| |
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| T |
27062522 |
gagtttcttacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaacgattttatagagtggcatttcatcgagttcactcactttta |
27062621 |
T |
|
| Q |
208 |
acacaacttttccatccacagtagtattaccataataccctataggcaaaggatcataacctttcatgctgcgtctaataccaactaacatattcaacat |
307 |
Q |
| |
|
| ||||||||| |||| | |||| ||| |||||||||||| |||| |||| |||||| | ||| | | ||||| ||||||||||||| ||| | ||| |
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| T |
27062622 |
aaacaacttttgcatctatggtagaattgccataataccctttaggtaaagtttcataatccatcaagtttcgtctgataccaactaacacatttagcat |
27062721 |
T |
|
| Q |
308 |
tgtttttccattgttgctaagttgtaaggctcttgctcttga |
349 |
Q |
| |
|
|||||| ||||| ||||||||| |||||||||||||||||| |
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|
| T |
27062722 |
tgttttgtcattgctgctaagttttaaggctcttgctcttga |
27062763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 111 - 355
Target Start/End: Original strand, 27098314 - 27098558
Alignment:
| Q |
111 |
tttttgacataatcagtggaggaagcaatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaacttttaaca |
210 |
Q |
| |
|
||||||||| ||||||||| ||||||||| ||||||| |||| |||| | ||||| |||||||||||||||| |||||| |||||||||||||||||||| |
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|
| T |
27098314 |
tttttgacaaaatcagtggtggaagcaatgtttttagtctctctgatgagcttaataatttcatagagtggcctttcatcgagctcactaacttttaaca |
27098413 |
T |
|
| Q |
211 |
caacttttccatccacagtagtattaccataataccctataggcaaaggatcataacctttcatgctgcgtctaataccaactaacatattcaacattgt |
310 |
Q |
| |
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|| ||| |||| ||| | ||| |||||||| || |||| ||||||||| || | |||| | ||||||||||||| ||| || ||| | ||| |
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| T |
27098414 |
cagtgtttgcatcaacacatgaattcccataataaccattaggtaaaggatcaaaatccttcaagttgcgtctaatacctgctacaatggtcagtactgt |
27098513 |
T |
|
| Q |
311 |
ttttccattgttgctaagttgtaaggctcttgctcttgatgtcca |
355 |
Q |
| |
|
|| |||||| || |||||| ||||||||||||||||||| |||| |
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|
| T |
27098514 |
ttcaccattgctgttaagttttaaggctcttgctcttgatctcca |
27098558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 111 - 355
Target Start/End: Original strand, 27105313 - 27105557
Alignment:
| Q |
111 |
tttttgacataatcagtggaggaagcaatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaacttttaaca |
210 |
Q |
| |
|
||||||| | ||||||||| ||||||||| ||||||| |||| | || | |||| |||||||||||||||| |||||| |||||| ||||||||||||| |
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|
| T |
27105313 |
tttttgataaaatcagtggtggaagcaatgtttttagtctctcttattaggttaataatttcatagagtggcctttcatcgagctcgctaacttttaaca |
27105412 |
T |
|
| Q |
211 |
caacttttccatccacagtagtattaccataataccctataggcaaaggatcataacctttcatgctgcgtctaataccaactaacatattcaacattgt |
310 |
Q |
| |
|
|| ||| |||| ||| | ||| |||||||| || |||| ||||| ||| || | |||| |||||||||||||| ||| || |||||| ||| |
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|
| T |
27105413 |
cagtgtttgcatcaacacatgaattcccataataaccattaggtaaaggttcaaaatccttcaacttgcgtctaataccagctacaatggtcaacactgt |
27105512 |
T |
|
| Q |
311 |
ttttccattgttgctaagttgtaaggctcttgctcttgatgtcca |
355 |
Q |
| |
|
|| ||||||||| |||||| ||||||||||||||||||| |||| |
|
|
| T |
27105513 |
ttcaccattgttgttaagttttaaggctcttgctcttgatctcca |
27105557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 108 - 293
Target Start/End: Original strand, 27085645 - 27085830
Alignment:
| Q |
108 |
gagtttttgacataatcagtggaggaagcaatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaactttta |
207 |
Q |
| |
|
|||||| | |||||||||| | | ||||||| ||||||| |||||| |||| ||||| ||||||||||||||||||| |||||| |||| ||||||| |
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|
| T |
27085645 |
gagtttgtaacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaatggtttcatagagtggcatttcgttgagcacactcactttta |
27085744 |
T |
|
| Q |
208 |
acacaacttttccatccacagtagtattaccataataccctataggcaaaggatcataacctttcatgctgcgtctaataccaact |
293 |
Q |
| |
|
| ||||| ||| |||| | | ||| ||| |||||||||||| |||| |||| ||||||| | || | | |||||||| |||||||| |
|
|
| T |
27085745 |
aaacaacatttacatctataatagaattcccataataccctttaggtaaagtatcataatcctttaagttgcgtctactaccaact |
27085830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 108 - 248
Target Start/End: Original strand, 27041208 - 27041348
Alignment:
| Q |
108 |
gagtttttgacataatcagtggaggaagcaatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaactttta |
207 |
Q |
| |
|
|||||| | |||||||||| | | ||||||| ||||||| |||||| |||| ||||| ||||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
27041208 |
gagtttgtaacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaatggtttcatagagtggcatttcgttgagctcactcactttta |
27041307 |
T |
|
| Q |
208 |
acacaacttttccatccacagtagtattaccataataccct |
248 |
Q |
| |
|
| ||||| ||| |||| | ||||| ||| |||||||||||| |
|
|
| T |
27041308 |
aaacaacatttacatctatagtagaatttccataataccct |
27041348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 27105209 - 27105258
Alignment:
| Q |
4 |
catcaacaaaacctaaatgcttccactcagtcagaatcgttaccgcaccg |
53 |
Q |
| |
|
|||||| |||||||||||| |||||||| ||||||| |||||| |||||| |
|
|
| T |
27105209 |
catcaagaaaacctaaatgtttccactctgtcagaaccgttactgcaccg |
27105258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 27098210 - 27098258
Alignment:
| Q |
4 |
catcaacaaaacctaaatgcttccactcagtcagaatcgttaccgcacc |
52 |
Q |
| |
|
|||||| |||||||||||| |||||||| ||||||| |||||| ||||| |
|
|
| T |
27098210 |
catcaagaaaacctaaatgtttccactctgtcagaaccgttactgcacc |
27098258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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