View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8267_low_4 (Length: 357)
Name: NF8267_low_4
Description: NF8267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8267_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 25606842 - 25607181
Alignment:
| Q |
1 |
ttgtggtgatggaaacaacgtggtatcaacatttgtctttaactaaggattgaaaaagtgtaattatacgtgcggcacataaatccaagataatatgata |
100 |
Q |
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| T |
25606842 |
ttgtggtgatggaaacaacgtggtatcaacatttgtctttaactaaggattgaaaaagtgttattatacgtgcggcacataaatccaagataatatgata |
25606941 |
T |
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| Q |
101 |
gattaaacaagaagatgcatttaaataataataacttaagaagcaaggaacagatctctataccttaaaaatcaaaacaaacgaatttcgtatctgaaga |
200 |
Q |
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| T |
25606942 |
gattaaacaagaagatgcatttaaataataataacttaagaagcaaggaacagatctctataccttaaaaatcaaaacaaacgaatttcgtatctgaaga |
25607041 |
T |
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| Q |
201 |
atattttagagatcagaatttgaggtttggtttttctatgattcattcacaggggacnnnnnnnntgtcaactaatcaaggaaggattggtggcaaagaa |
300 |
Q |
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| T |
25607042 |
atattttagaaatcagaatttgaggtttggtttttctatgattcattcacatgggacaaaaaaaatgtcaactaatcaaggaaggattggtggcaaagaa |
25607141 |
T |
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| Q |
301 |
aacgttgttgaggtttttgtttttctacaagattgttgat |
340 |
Q |
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| T |
25607142 |
aacgttgttgaggtttttgtttttctaccagattggtgat |
25607181 |
T |
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