View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8267_low_5 (Length: 247)
Name: NF8267_low_5
Description: NF8267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8267_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 1438226 - 1438461
Alignment:
| Q |
1 |
tcccatgttatctttaatacagcaaatcagtactatggctggtaatcaagtaccaagctattttgtgtgggaagttctctttacaatgtccatcatagga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1438226 |
tcccatgttatctttaatacagcaaatcagtactatggctggtaatcaagtaccaagctattttgtgtgggaagttctctttacaatgtccatcatagga |
1438325 |
T |
|
| Q |
101 |
ttgggactcttgctttatgcgcttctcattggaaacatacagaactttcttcaggctcttggacggaggtagaacgtggttctcttactttatgtgcacg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1438326 |
ttgggactcttgctttatgcgcttctcattggaaacatacagaactttcttcaggctcttggacggaggtagaacgtggttctcttactttatgtgcacg |
1438425 |
T |
|
| Q |
201 |
ttaattgtgggtgacttcaatgctttgtcgtgtgtg |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
1438426 |
ttaattgtgggtgacttcaatgctttgtcgtgtgtg |
1438461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 28089528 - 28089754
Alignment:
| Q |
10 |
atctttaatacagcaaatcagtactatggctggtaatcaagtaccaagctattttgtgtgggaagttctctttacaatgtccatcataggattgggactc |
109 |
Q |
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||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28089528 |
atctttaatacagcaaatcagtactctagctggtaatcaagaaccaagctattttgtgtgggaagttctttttacaatgtccatcataggattgggactc |
28089627 |
T |
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| Q |
110 |
ttgctttatgcgcttctcattggaaacatacagaactttcttcaggctcttggacggaggtagaacgtggttctcttactttatgtgcacgttaattgtg |
209 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
28089628 |
ttgctttttgcgcttctcattggaaacatacagaactttcttcaggctcttggacggaggtagaacgtggttctcttactttatgtttacgttaattgtt |
28089727 |
T |
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| Q |
210 |
ggtgacttcaatgctttgtcgtgtgtg |
236 |
Q |
| |
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|||||| |||||||||| | ||||||| |
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| T |
28089728 |
ggtgacatcaatgctttattgtgtgtg |
28089754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 12 - 159
Target Start/End: Original strand, 27910697 - 27910844
Alignment:
| Q |
12 |
ctttaatacagcaaatcagtactatggctggtaatcaagtaccaagctattttgtgtgggaagttctctttacaatgtccatcataggattgggactctt |
111 |
Q |
| |
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|||||||||||||| ||| ||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
27910697 |
ctttaatacagcaagtcatgactctggctggtaatcaaactccaagctattttgtgtgggaagtcctctttacaatgtccatcatagcattgggactctt |
27910796 |
T |
|
| Q |
112 |
gctttatgcgcttctcattggaaacatacagaactttcttcaggctct |
159 |
Q |
| |
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|||| | ||||||||| |||||||| |||| |||| ||||| |||| |
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| T |
27910797 |
gcttctagtgcttctcatcggaaacatgcagagctttattcagtctct |
27910844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 52 - 175
Target Start/End: Original strand, 28531981 - 28532104
Alignment:
| Q |
52 |
accaagctattttgtgtgggaagttctctttacaatgtccatcataggattgggactcttgctttatgcgcttctcattggaaacatacagaactttctt |
151 |
Q |
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|
||||||||||||||| ||||||||||| |||||||| | ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
28531981 |
accaagctattttgtatgggaagttctttttacaattgcaatcataggattgggactcttgctttttgcacttctcattggaaacatacagaactttctc |
28532080 |
T |
|
| Q |
152 |
caggctcttggacggaggtagaac |
175 |
Q |
| |
|
|| | ||||||| | ||||||||| |
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| T |
28532081 |
caaggtcttggaagaaggtagaac |
28532104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 28071401 - 28071550
Alignment:
| Q |
13 |
tttaatacagcaaatcagtactatggctggtaatcaagtaccaagctattttgtgtgggaagttctctttacaatgtccatcataggattgggactcttg |
112 |
Q |
| |
|
||||||||||||| | | |||||||||||| ||||||| ||||||||||||||||||||||| || |||||||||| |||||| | |||||||||||| |
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| T |
28071401 |
tttaatacagcaagtaattactatggctggcaatcaagctccaagctattttgtgtgggaagtcctttttacaatgtgcatcatggcgttgggactcttg |
28071500 |
T |
|
| Q |
113 |
ctttatgcgcttctcattggaaacatacagaactttcttcaggctcttgg |
162 |
Q |
| |
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||| || |||||||| |||||||||||| |||| ||||| ||||||| |
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| T |
28071501 |
cttctagcacttctcatcggaaacatacagggcttttttcagtctcttgg |
28071550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 27999579 - 27999706
Alignment:
| Q |
15 |
taatacagcaaatcagtactatggctggtaatcaagtaccaagctattttgtgtgggaagttctctttacaatgtccatcataggattgggactcttgct |
114 |
Q |
| |
|
||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||| ||||||||| | |||||||| | |||||||||| | || |
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| T |
27999579 |
taatacagcaaatcattactctggctggtaatcaaactccaagctattttgtgtgggaagtcctctttacagtttccatcatggcattgggactcatact |
27999678 |
T |
|
| Q |
115 |
ttatgcgcttctcattggaaacatacag |
142 |
Q |
| |
|
| || |||||||| |||||||||||| |
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| T |
27999679 |
tctagcccttctcatcggaaacatacag |
27999706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 28015617 - 28015720
Alignment:
| Q |
12 |
ctttaatacagcaaatcagtactatggctggtaatcaagtaccaagctattttgtgtgggaagttctctttacaatgtccatcataggattgggactctt |
111 |
Q |
| |
|
||||| |||||||||||| |||| |||||||||||||| |||||||||| | |||||||||| |||||||||||||||||||| | |||||||||||| |
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| T |
28015617 |
ctttattacagcaaatcattactctggctggtaatcaaactccaagctattatttgtgggaagtcctctttacaatgtccatcatggcattgggactctt |
28015716 |
T |
|
| Q |
112 |
gctt |
115 |
Q |
| |
|
|||| |
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|
| T |
28015717 |
gctt |
28015720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 163
Target Start/End: Original strand, 27895980 - 27896091
Alignment:
| Q |
52 |
accaagctattttgtgtgggaagttctctttacaatgtccatcataggattgggactcttgctttatgcgcttctcattggaaacatacagaactttctt |
151 |
Q |
| |
|
||||||||||||| | |||||||| || ||||| ||| ||||| ||||| ||||||||||||| || |||||||||||||||||||| ||||||||| |
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| T |
27895980 |
accaagctattttatttgggaagtcctttttacgatgggaatcattggattaggactcttgcttttcgctcttctcattggaaacatacaaaactttctt |
27896079 |
T |
|
| Q |
152 |
caggctcttgga |
163 |
Q |
| |
|
|||||||||||| |
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| T |
27896080 |
caggctcttgga |
27896091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 12 - 206
Target Start/End: Original strand, 28032721 - 28032913
Alignment:
| Q |
12 |
ctttaatacagcaaatcagtactatggctggtaatcaagtaccaagctattttgtgtgggaagttctctttacaatgtccatcataggattgggactctt |
111 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||| ||||| ||| | ||||||| | |||||||||||||||||||| | |||||||||||| |
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| T |
28032721 |
ctttaatacagcaaatcattactctggctggtaatcaaactccaagtaattcttcgtgggaaatcctctttacaatgtccatcatggtattgggactctt |
28032820 |
T |
|
| Q |
112 |
gctttatgcgcttctcattggaaacatacagaactttcttcaggctcttggacggaggtagaacgtggttctcttactttatgtgcacgttaatt |
206 |
Q |
| |
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| ||||| ||||||||| | |||||||| || | |||| |||||| || ||||||||| || |||||||||||| |||||| ||||||| |
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| T |
28032821 |
gtaccttgcgcatctcattggcaccatacagacctctaatcagtctcttgcacagaggtagaa--tgtttctcttactttctgtgcatgttaatt |
28032913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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