View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8267_low_6 (Length: 243)

Name: NF8267_low_6
Description: NF8267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8267_low_6
NF8267_low_6
[»] chr4 (24 HSPs)
chr4 (43-217)||(42420449-42420622)
chr4 (45-180)||(13850201-13850336)
chr4 (43-142)||(17210640-17210739)
chr4 (43-156)||(18411950-18412063)
chr4 (43-150)||(21710903-21711010)
chr4 (43-150)||(31825610-31825717)
chr4 (43-141)||(27759006-27759104)
chr4 (45-169)||(13865739-13865863)
chr4 (43-155)||(14331455-14331567)
chr4 (46-155)||(31323675-31323783)
chr4 (43-129)||(49063349-49063435)
chr4 (43-151)||(24606098-24606206)
chr4 (43-135)||(31931077-31931169)
chr4 (47-135)||(32938620-32938708)
chr4 (45-140)||(23125290-23125385)
chr4 (43-107)||(31825364-31825428)
chr4 (103-193)||(20759791-20759880)
chr4 (103-193)||(20766182-20766271)
chr4 (43-141)||(20779689-20779794)
chr4 (55-155)||(44099826-44099924)
chr4 (58-110)||(39039512-39039564)
chr4 (73-137)||(33164314-33164378)
chr4 (43-81)||(20759754-20759792)
chr4 (43-81)||(20766145-20766183)
[»] chr1 (24 HSPs)
chr1 (43-217)||(15470976-15471150)
chr1 (43-155)||(21760991-21761103)
chr1 (43-150)||(21485387-21485494)
chr1 (44-140)||(3658016-3658112)
chr1 (43-155)||(48569166-48569278)
chr1 (43-150)||(39224961-39225068)
chr1 (43-214)||(26088763-26088931)
chr1 (43-155)||(48707532-48707644)
chr1 (43-151)||(18169372-18169480)
chr1 (43-135)||(41875639-41875731)
chr1 (54-155)||(25804191-25804292)
chr1 (43-155)||(27259405-27259517)
chr1 (43-154)||(5764546-5764657)
chr1 (43-141)||(46182306-46182404)
chr1 (55-155)||(27799099-27799199)
chr1 (43-107)||(49599610-49599674)
chr1 (43-122)||(18841824-18841903)
chr1 (55-110)||(34335728-34335783)
chr1 (55-155)||(12025654-12025753)
chr1 (73-137)||(50069035-50069099)
chr1 (103-210)||(22923471-22923578)
chr1 (113-155)||(6086553-6086595)
chr1 (73-137)||(11821361-11821425)
chr1 (73-137)||(45688530-45688594)
[»] chr7 (17 HSPs)
chr7 (43-180)||(8726970-8727107)
chr7 (43-214)||(31266820-31266992)
chr7 (44-155)||(39477796-39477907)
chr7 (47-156)||(7414627-7414736)
chr7 (43-135)||(18236934-18237026)
chr7 (43-217)||(12082344-12082516)
chr7 (43-142)||(28065775-28065874)
chr7 (45-150)||(13798669-13798774)
chr7 (43-155)||(21615511-21615613)
chr7 (66-150)||(40592083-40592167)
chr7 (43-100)||(11823879-11823936)
chr7 (43-135)||(27318452-27318544)
chr7 (43-97)||(18146354-18146408)
chr7 (45-110)||(16887077-16887142)
chr7 (79-137)||(20379439-20379497)
chr7 (73-137)||(26603984-26604048)
chr7 (73-137)||(30359907-30359971)
[»] chr2 (14 HSPs)
chr2 (43-218)||(26618094-26618268)
chr2 (43-155)||(32734130-32734242)
chr2 (43-150)||(16706175-16706282)
chr2 (43-150)||(20147470-20147577)
chr2 (43-150)||(42241847-42241954)
chr2 (44-193)||(18877953-18878100)
chr2 (43-150)||(29905933-29906039)
chr2 (44-155)||(40500777-40500888)
chr2 (43-116)||(29110552-29110625)
chr2 (44-144)||(21557374-21557474)
chr2 (55-110)||(5307115-5307170)
chr2 (73-140)||(17796894-17796961)
chr2 (45-142)||(27651407-27651504)
chr2 (73-137)||(22492651-22492715)
[»] chr5 (16 HSPs)
chr5 (43-217)||(15798708-15798881)
chr5 (45-180)||(2598670-2598805)
chr5 (43-153)||(10975297-10975407)
chr5 (44-150)||(33369990-33370096)
chr5 (43-155)||(4113844-4113956)
chr5 (43-150)||(7081639-7081746)
chr5 (43-154)||(36317664-36317775)
chr5 (43-142)||(23229358-23229457)
chr5 (43-134)||(12804928-12805019)
chr5 (43-142)||(25361209-25361308)
chr5 (44-135)||(28717573-28717664)
chr5 (43-134)||(12742113-12742200)
chr5 (43-129)||(22858339-22858425)
chr5 (55-155)||(16418728-16418827)
chr5 (73-137)||(3458187-3458251)
chr5 (43-178)||(19747520-19747651)
[»] chr8 (7 HSPs)
chr8 (43-155)||(40414083-40414195)
chr8 (43-141)||(16575056-16575154)
chr8 (55-155)||(22843967-22844067)
chr8 (43-181)||(14998730-14998868)
chr8 (43-141)||(43692504-43692602)
chr8 (73-137)||(28706916-28706980)
chr8 (73-137)||(33800307-33800371)
[»] chr3 (16 HSPs)
chr3 (43-155)||(48088307-48088419)
chr3 (43-150)||(37280813-37280920)
chr3 (43-141)||(7953571-7953669)
chr3 (43-141)||(53561256-53561354)
chr3 (47-155)||(8634152-8634260)
chr3 (52-155)||(14264899-14265002)
chr3 (44-155)||(19234540-19234651)
chr3 (44-155)||(36722111-36722222)
chr3 (43-129)||(25577341-25577427)
chr3 (43-154)||(39417709-39417819)
chr3 (43-107)||(6465089-6465153)
chr3 (44-149)||(17370293-17370397)
chr3 (44-133)||(13626320-13626409)
chr3 (44-135)||(43687604-43687694)
chr3 (44-121)||(1639221-1639298)
chr3 (73-137)||(42950825-42950889)
[»] chr6 (10 HSPs)
chr6 (43-141)||(800526-800624)
chr6 (43-154)||(3098124-3098233)
chr6 (52-155)||(24559345-24559448)
chr6 (44-142)||(5570631-5570729)
chr6 (77-155)||(4286561-4286639)
chr6 (44-133)||(446097-446186)
chr6 (43-101)||(18744579-18744637)
chr6 (58-155)||(19242284-19242381)
chr6 (62-135)||(28050777-28050850)
chr6 (55-135)||(34208294-34208373)
[»] scaffold0121 (1 HSPs)
scaffold0121 (43-156)||(4689-4801)
[»] scaffold0489 (1 HSPs)
scaffold0489 (43-155)||(7505-7617)
[»] scaffold0004 (1 HSPs)
scaffold0004 (47-100)||(39325-39378)
[»] scaffold1763 (1 HSPs)
scaffold1763 (80-137)||(165-222)


Alignment Details
Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 43 - 217
Target Start/End: Complemental strand, 42420622 - 42420449
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||||||||||||||| ||||||||||| |||||||| |||||||| ||||| || |||||||||||||||||||||||| |||||     
T  42420622 ggttaatggtgtttgattatgaaaacttacttgttattggaatgttgtttgatttgaacttgaaggaa-tttggatttgggtgatttgagagagattttg 42420524  T
Q  143 aagattttagatggaaagtgagaaaaggaggttttgtccggcctttaaaacgacatgcattgtgagttaactcac 217  Q
     ||||||||||||| || ||||||||   |||| |||| | |||||||||||||| |||  ||||||||||||||    
T  42420523 gagattttagatgggaaatgagaaaatagggttctgtctgacctttaaaacgacacgcagcgtgagttaactcac 42420449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 45 - 180
Target Start/End: Complemental strand, 13850336 - 13850201
Alignment:
Q  45 ttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaattttaaa 144  Q
    |||||| |||||||||||||||||||| ||||||  |||||| ||||| |||||||| ||||| || |||||||||||||||||||||||| |||||  |    
T  13850336 ttaatggtgtttgattatgaaaacttacttgttaagggagtgatgtttgatttgaacttgaaggaattttggatttgggtgatttgagagacattttgga 13850237  T
Q  145 gattttagatggaaagtgagaaaaggaggttttgtc 180  Q
    ||||||||||| |||||||| ||| ||||| |||||    
T  13850236 gattttagatgaaaagtgaggaaatgaggtgttgtc 13850201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 43 - 142
Target Start/End: Complemental strand, 17210739 - 17210640
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||||| |||||||||| ||||||    
T  17210739 ggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaacttgaagaaattttggatttgggtaatttgagagagatttta 17210640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 43 - 156
Target Start/End: Complemental strand, 18412063 - 18411950
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||||||||||||||| |||||| |||||||| |||| |||||||| |||||||| |||| |||||||| ||||||||||||||||     
T  18412063 ggttaatggtgtttgattatgaaaacttacttgttaatggagtgtggtttgatttgaacttgaagaaattttgaatttgggtaatttgagagaaattttt 18411964  T
Q  143 aagattttagatgg 156  Q
     |||||||||||||    
T  18411963 gagattttagatgg 18411950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 43 - 150
Target Start/End: Complemental strand, 21711010 - 21710903
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||| || ||||||||||| |||||||||||| |||||     
T  21711010 ggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttggatttggatgatttgagagagattttt 21710911  T
Q  143 aagatttt 150  Q
     |||||||    
T  21710910 gagatttt 21710903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 43 - 150
Target Start/End: Original strand, 31825610 - 31825717
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||| ||| |||||     
T  31825610 ggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttggatttgggtgatttgatagagattttt 31825709  T
Q  143 aagatttt 150  Q
     |||||||    
T  31825710 gagatttt 31825717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 27759104 - 27759006
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttt 141  Q
    |||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||| || ||||||||||| |||||||||||| |||||    
T  27759104 ggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttggatttggatgatttgagagagatttt 27759006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 45 - 169
Target Start/End: Complemental strand, 13865863 - 13865739
Alignment:
Q  45 ttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaattttaaa 144  Q
    |||||| |||||||||||||||||||| |||||| ||||||| ||||| |||| ||| ||||| || |||||||||||||||||| ||||| |||||  |    
T  13865863 ttaatggtgtttgattatgaaaacttacttgttaatggagtgatgtttgattttaacttgaaggaattttggatttgggtgatttaagagacattttgga 13865764  T
Q  145 gattttagatggaaagtgagaaaag 169  Q
    |||||||||||  ||||||| ||||    
T  13865763 gattttagatgagaagtgaggaaag 13865739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 155
Target Start/End: Original strand, 14331455 - 14331567
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||| || ||||| || ||| |||||| ||||||||||||| |||||     
T  14331455 ggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttggacctgaaggaattttagatttgagtgatttgagagagattttt 14331554  T
Q  143 aagattttagatg 155  Q
     ||||||||||||    
T  14331555 gagattttagatg 14331567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 155
Target Start/End: Complemental strand, 31323783 - 31323675
Alignment:
Q  46 taatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaattttaaag 145  Q
    ||||| |||||||||||||||||||| |||||| ||||||||||||| |||||||  ||||| || ||||||||||||||| |||||||| |||||  ||    
T  31323783 taatggtgtttgattatgaaaacttacttgttaatggagtgttgtttgatttgaatttgaaggaattttggatttgggtga-ttgagagagattttggag 31323685  T
Q  146 attttagatg 155  Q
    ||||||||||    
T  31323684 attttagatg 31323675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 49063435 - 49063349
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgattt 129  Q
    |||||||| |||||||| ||||||||||| ||||||||||| |||||||| |||||||| ||||| || ||||||||||||||||||    
T  49063435 ggttaatggtgtttgatcatgaaaacttacttgttattggaatgttgtttgatttgaacttgaaggaattttggatttgggtgattt 49063349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 151
Target Start/End: Complemental strand, 24606206 - 24606098
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||  |||||||||||||||||||| |||||||| ||||||||||| |||||||| ||||| || |||||||||| |||||| |||| | |||||     
T  24606206 ggttaattgtgtttgattatgaaaacttacttgttattagagtgttgtttgatttgaacttgaaggaattttggatttgagtgattagagatagattttt 24606107  T
Q  143 aagatttta 151  Q
     ||||||||    
T  24606106 gagatttta 24606098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 135
Target Start/End: Complemental strand, 31931169 - 31931077
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagaga 135  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||  |||||||| |||||||| |  |||||| | ||||||||||||    
T  31931169 ggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaacttgaagaaattagggatttcgttgatttgagaga 31931077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 135
Target Start/End: Original strand, 32938620 - 32938708
Alignment:
Q  47 aatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagaga 135  Q
    ||||||||||||||||||||||||| |||| ||||||||||||||| |||||||| ||||| |  ||||||||||| |||| |||||||    
T  32938620 aatgatgtttgattatgaaaacttacttgtgattggagtgttgtttgatttgaacttgaaggatttttggatttggatgatatgagaga 32938708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 45 - 140
Target Start/End: Original strand, 23125290 - 23125385
Alignment:
Q  45 ttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaattt 140  Q
    |||| ||| |||||||||||||||||| |||||||| ||||||||||| |||||||  ||||| || |||| ||||||||||||||||||| ||||    
T  23125290 ttaacgatatttgattatgaaaacttacttgttattagagtgttgtttgatttgaagttgaaggaattttgaatttgggtgatttgagagagattt 23125385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 31825364 - 31825428
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaag 107  Q
    |||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||| |||||    
T  31825364 ggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaag 31825428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 193
Target Start/End: Original strand, 20759791 - 20759880
Alignment:
Q  103 tgaagaaaatttggatttgggtgatttgagagaaattttaaagattttagatggaaagtgagaaaaggaggttttgtccggcctttaaaac 193  Q
    ||||| || |||||||||||||||||||||||| |||||  |||||||||||||||  |||| ||| |||||||||| | |||||||||||    
T  20759791 tgaaggaattttggatttgggtgatttgagagagattttggagattttagatggaacatgaggaaatgaggttttgt-ctgcctttaaaac 20759880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 193
Target Start/End: Original strand, 20766182 - 20766271
Alignment:
Q  103 tgaagaaaatttggatttgggtgatttgagagaaattttaaagattttagatggaaagtgagaaaaggaggttttgtccggcctttaaaac 193  Q
    ||||| || |||||||||||||||||||||||| |||||  |||||||||||||||  |||| ||| |||||||||| | |||||||||||    
T  20766182 tgaaggaattttggatttgggtgatttgagagagattttggagattttagatggaacatgaggaaatgaggttttgt-ctgcctttaaaac 20766271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 20779689 - 20779794
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgttt-------aatttgaacgtgaagaaaatttggatttgggtgatttgagaga 135  Q
    |||||||| |||||||||||||||||||| ||||||||| ||||||||||        |||| ||| ||||| || |||||||||||||||||||| |||    
T  20779689 ggttaatggtgtttgattatgaaaacttacttgttattgaagtgttgtttgatttaagatttaaacttgaaggaattttggatttgggtgatttgaaaga 20779788  T
Q  136 aatttt 141  Q
     |||||    
T  20779789 gatttt 20779794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 44099924 - 44099826
Alignment:
Q  55 ttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaattttaaagattttagat 154  Q
    |||||| |||||||||| |||||||||||||||||||| |||||||   ||| ||| |   ||||||| ||||||||||||  ||||| |||||||||||    
T  44099924 ttgattgtgaaaacttacttgttattggagtgttgtttgatttgaa--agaaaaaattgaagatttggatgatttgagagagtttttagagattttagat 44099827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 110
Target Start/End: Original strand, 39039512 - 39039564
Alignment:
Q  58 attatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaa 110  Q
    |||||||||||||| ||||||||||||||||| || |||||||| ||||||||    
T  39039512 attatgaaaacttacttgttattggagtgttggttgatttgaacttgaagaaa 39039564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 33164314 - 33164378
Alignment:
Q  73 ttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaa 137  Q
    ||||| |||||||||||||| |||||||  ||||| || |||||| |||||| ||||||||||||    
T  33164314 ttgttgttggagtgttgtttgatttgaagttgaaggaattttggagttgggtaatttgagagaaa 33164378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 20759754 - 20759792
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattg 81  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  20759754 ggttaatggtgtttgattatgaaaacttacttgttattg 20759792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Original strand, 20766145 - 20766183
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattg 81  Q
    |||||||| |||||||||||||||||||| |||||||||    
T  20766145 ggttaatggtgtttgattatgaaaacttacttgttattg 20766183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 43 - 217
Target Start/End: Complemental strand, 15471150 - 15470976
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||  ||||||| ||||| || ||||||||||||||||||||||||||||||     
T  15471150 ggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgctttgaacttgaaggaattttggatttgggtgatttgagagaaattttg 15471051  T
Q  143 aagattttagatggaaagtgagaaaaggaggttttgtccggcctttaaaacgacatgcattgtgagttaactcac 217  Q
     ||||||||||||| || |||| ||| ||| || |||| |  |||||||| || | |||  ||||||||||||||    
T  15471050 gagattttagatgggaaatgaggaaatgagcttatgtctgagctttaaaaggatacgcaacgtgagttaactcac 15470976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 43 - 155
Target Start/End: Original strand, 21760991 - 21761103
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||| ||||     
T  21760991 ggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttggatttgggtgatttgagagaatttttg 21761090  T
Q  143 aagattttagatg 155  Q
     |||||| |||||    
T  21761091 gagatttgagatg 21761103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 43 - 150
Target Start/End: Original strand, 21485387 - 21485494
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| || |||||||||||||||||| |||||||||||     
T  21485387 ggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttggatttgggtgatttcagagaaattttt 21485486  T
Q  143 aagatttt 150  Q
     |||||||    
T  21485487 gagatttt 21485494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 44 - 140
Target Start/End: Complemental strand, 3658112 - 3658016
Alignment:
Q  44 gttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaattt 140  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||||||| ||||    
T  3658112 gttaatgatgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttggatttgggtgatttgagagagattt 3658016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 43 - 155
Target Start/End: Original strand, 48569166 - 48569278
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    ||||||||||||||||| ||||||||||| ||||||||||| |||||||| |||||||| ||||| || ||||||||| |||||||||||||| |||||     
T  48569166 ggttaatgatgtttgatcatgaaaacttacttgttattggaatgttgtttgatttgaacttgaaggaattttggattttggtgatttgagagagattttt 48569265  T
Q  143 aagattttagatg 155  Q
     ||||||||||||    
T  48569266 gagattttagatg 48569278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 43 - 150
Target Start/End: Original strand, 39224961 - 39225068
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||| |||||||||     
T  39224961 ggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttggatttgggtgatttgaaagaaattttt 39225060  T
Q  143 aagatttt 150  Q
     |||||||    
T  39225061 gagatttt 39225068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 26088931 - 26088763
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||||||||||| ||| |||||||||| ||||||||| |||||||  ||||| || |||||||||||||||||||||||| |||||     
T  26088931 ggttaatggtgtttgattatgaaaatttacttgttattggtgtgttgtttgatttgaagttgaagtaattttggatttgggtgatttgagagagattttg 26088832  T
Q  143 aagattttagatggaaagtgagaaaaggaggttttgtccggcctttaaaacgacatgcattgtgagttaact 214  Q
     |||   ||||||  || |||||||| |||||| |||| | ||||||||| |||| |||  |||||||||||    
T  26088831 gaga---tagatgagaaatgagaaaatgaggttatgtctgacctttaaaaggacacgcagcgtgagttaact 26088763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 155
Target Start/End: Original strand, 48707532 - 48707644
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||| |||| ||| ||||| || || |||||||| |||||||||||| |||||     
T  48707532 ggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttaaacttgaaggaatttcggatttggttgatttgagagagattttg 48707631  T
Q  143 aagattttagatg 155  Q
     ||||||||||||    
T  48707632 tagattttagatg 48707644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 151
Target Start/End: Complemental strand, 18169480 - 18169372
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||| | |||||||| ||||||||||| ||||||||||||| |||||| |||||||| ||||| || |||||||||||||||||||||||| |||||     
T  18169480 ggttaagggtgtttgatcatgaaaacttacttgttattggagtattgtttgatttgaacatgaaggaattttggatttgggtgatttgagagagattttt 18169381  T
Q  143 aagatttta 151  Q
     ||||||||    
T  18169380 gagatttta 18169372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 43 - 135
Target Start/End: Original strand, 41875639 - 41875731
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagaga 135  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||| || ||| || |||| ||||||||||||    
T  41875639 ggttaatgatgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttagaattggatgatttgagaga 41875731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 54 - 155
Target Start/End: Original strand, 25804191 - 25804292
Alignment:
Q  54 tttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaattttaaagattttaga 153  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||| |||| ||| |  |||||||  ||||||||||||  ||||| ||||||||||    
T  25804191 tttgattatgaaaacttatttgttattggagtgttgtttgatttgaacttgaaaaaattaaggatttgattgatttgagagagtttttagagattttaga 25804290  T
Q  154 tg 155  Q
    ||    
T  25804291 tg 25804292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 155
Target Start/End: Complemental strand, 27259517 - 27259405
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| ||||||||||||||||||||||||||| |||||| |||||| |||| ||| ||||  || ||||||||||| ||||| | |||| |||||     
T  27259517 ggttaatgttgtttgattatgaaaacttagttgttactggagtattgtttgattttaacttgaaagaattttggatttggttgattagggagagattttg 27259418  T
Q  143 aagattttagatg 155  Q
     ||||||||||||    
T  27259417 gagattttagatg 27259405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 43 - 154
Target Start/End: Complemental strand, 5764657 - 5764546
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||||||||||||||| ||||||||||| |||||| | |||||||| ||||  || |||| |||| ||||||||||||||  ||||     
T  5764657 ggttaatggtgtttgattatgaaaacttacttgttattggattgttgtgtgatttgaacttgaatgaattttgaattttggtgatttgagagaggttttt 5764558  T
Q  143 aagattttagat 154  Q
     |||||||||||    
T  5764557 gagattttagat 5764546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 141
Target Start/End: Original strand, 46182306 - 46182404
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttt 141  Q
    |||||||| |||||||| ||||||||||| ||||||  ||| |||||||| |||||| | ||||| || |||| ||||||||||||||||||| |||||    
T  46182306 ggttaatggtgtttgatcatgaaaacttatttgttaccggactgttgtttgatttgagcttgaaggaattttgaatttgggtgatttgagagagatttt 46182404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 27799199 - 27799099
Alignment:
Q  55 ttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaattttaaagattttagat 154  Q
    ||||||||||||||||| ||||||||| ||||||| || |||||||| |||| ||| |  || ||||| |||||| ||||| |||||| |||||||||||    
T  27799199 ttgattatgaaaacttacttgttattgaagtgttggttgatttgaacttgaaaaaattgaggttttggatgatttaagagagattttagagattttagat 27799100  T
Q  155 g 155  Q
    |    
T  27799099 g 27799099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 49599610 - 49599674
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaag 107  Q
    |||||||| | |||||||||||||||||| |||||||||||||||||||| |||||||| |||||    
T  49599610 ggttaatggtctttgattatgaaaacttacttgttattggagtgttgtttgatttgaacttgaag 49599674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 18841903 - 18841824
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgg 122  Q
    |||||||| |||||||||||||||||||  |||||||||| ||||||||| |||| ||| ||||| || |||||||||||    
T  18841903 ggttaatggtgtttgattatgaaaacttttttgttattggtgtgttgtttgatttaaacttgaaggaattttggatttgg 18841824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 34335783 - 34335728
Alignment:
Q  55 ttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaa 110  Q
    ||||||||||||||||| ||||||||||||||||| || |||||||| ||||||||    
T  34335783 ttgattatgaaaacttacttgttattggagtgttggttgatttgaacttgaagaaa 34335728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 155
Target Start/End: Complemental strand, 12025753 - 12025654
Alignment:
Q  55 ttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaattttaaagattttagat 154  Q
    |||||||| |||| |||  ||||||||| |||||| || |||||||| ||| |||| || || ||||| ||||||||||||  ||||| |||||||||||    
T  12025753 ttgattataaaaaattacgtgttattggggtgttggttgatttgaacttgatgaaa-ttggggtttggatgatttgagagagtttttagagattttagat 12025655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 50069035 - 50069099
Alignment:
Q  73 ttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaa 137  Q
    ||||| |||||||||||||| |||||||  ||||| || |||||| |||||| ||||||||||||    
T  50069035 ttgttgttggagtgttgtttgatttgaagttgaaggaattttggagttgggtaatttgagagaaa 50069099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 210
Target Start/End: Original strand, 22923471 - 22923578
Alignment:
Q  103 tgaagaaaatttggatttgggtgatttgagagaaattttaaagattttagatggaaagtgagaaaaggaggttttgtccggcctttaaaacgacatgcat 202  Q
    ||||| || |||||||||| ||||||||||||| |||||  || |||||||||| || ||||||||  || ||||||| |  |||||||| |||| |||     
T  22923471 tgaaggaattttggatttgagtgatttgagagagatttttgaggttttagatgggaaatgagaaaatcagcttttgtctgaactttaaaaggacacgcaa 22923570  T
Q  203 tgtgagtt 210  Q
     |||||||    
T  22923571 cgtgagtt 22923578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 155
Target Start/End: Original strand, 6086553 - 6086595
Alignment:
Q  113 ttggatttgggtgatttgagagaaattttaaagattttagatg 155  Q
    ||||||||||||||||||||||| |||||  ||||||||||||    
T  6086553 ttggatttgggtgatttgagagagatttttgagattttagatg 6086595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 11821425 - 11821361
Alignment:
Q  73 ttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaa 137  Q
    ||||| ||||||| ||||||||||||||  ||||| || ||| || |||||| ||||||||||||    
T  11821425 ttgttgttggagtcttgtttaatttgaagttgaaggaattttagagttgggtaatttgagagaaa 11821361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 45688594 - 45688530
Alignment:
Q  73 ttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaa 137  Q
    ||||| |||||||||||||| |||||||  ||||| || |||||| |||| | ||||||||||||    
T  45688594 ttgttgttggagtgttgtttgatttgaagttgaaggaattttggagttggataatttgagagaaa 45688530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 43 - 180
Target Start/End: Original strand, 8726970 - 8727107
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||| |||||     
T  8726970 ggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaacttgaagaaattttggatttgggtgatttgagagagattttt 8727069  T
Q  143 aagattttagatggaaagtgagaaaaggaggttttgtc 180  Q
     ||||||||||||  || |||| ||| |||||| ||||    
T  8727070 gagattttagatgagaaatgaggaaacgaggttatgtc 8727107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 43 - 214
Target Start/End: Complemental strand, 31266992 - 31266820
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| ||||||||||||||||||||  | ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||| |||||     
T  31266992 ggttaatggtgtttgattatgaaaacttaccttttattggagtgttgtttgatttgaacttgaagaaattttggatttgggtgatttgagagagattttg 31266893  T
Q  143 aagatttt-agatggaaagtgagaaaaggaggttttgtccggcctttaaaacgacatgcattgtgagttaact 214  Q
     ||||||| |||||| || |||| ||| || |||||||| | | ||||||| ||||  || ||||||||||||    
T  31266892 gagattttcagatgggaaatgaggaaatgaagttttgtctgacttttaaaaggacacacagtgtgagttaact 31266820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 44 - 155
Target Start/End: Original strand, 39477796 - 39477907
Alignment:
Q  44 gttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaattttaa 143  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||||||| |||||      
T  39477796 gttaatgatgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttggatttgggtgatttgagagagatttttg 39477895  T
Q  144 agattttagatg 155  Q
    ||||||||||||    
T  39477896 agattttagatg 39477907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 7414627 - 7414736
Alignment:
Q  47 aatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaattttaaaga 146  Q
    |||| |||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| || |||| ||||||||||||||||| | |||||  |||    
T  7414627 aatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttgaatttgggtgatttgagaaagatttttgaga 7414726  T
Q  147 ttttagatgg 156  Q
    ||||||||||    
T  7414727 ttttagatgg 7414736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 43 - 135
Target Start/End: Complemental strand, 18237026 - 18236934
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagaga 135  Q
    |||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||  ||||| || |||| |||||||||||||||||||    
T  18237026 ggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaatttgaaggaattttgaatttgggtgatttgagaga 18236934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 217
Target Start/End: Complemental strand, 12082516 - 12082344
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||| ||||||||||||||| |||||||||||||||||||| |||| ||  ||| | || || |||||| |||||||| ||||| |||||     
T  12082516 ggttaatggtgttggattatgaaaacttacttgttattggagtgttgtttgatttaaagttgatggaatttcggattttggtgatttaagagagatttt- 12082418  T
Q  143 aagattttagatggaaagtgagaaaaggaggttttgtccggcctttaaaacgacatgcattgtgagttaactcac 217  Q
    | |||||||||||| ||||||| ||| |||||| || || |||||| ||||  || |||  ||||||||||||||    
T  12082417 aggattttagatgggaagtgaggaaatgaggttatg-cctgcctttcaaacatcacgcaacgtgagttaactcac 12082344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 43 - 142
Target Start/End: Complemental strand, 28065874 - 28065775
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||  ||||| || || |||||||  | |||||||||| ||||||    
T  28065874 ggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaagttgaaggaatttcggatttgaattatttgagagagatttta 28065775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 13798774 - 13798669
Alignment:
Q  45 ttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaattttaaa 144  Q
    |||||| ||||||||||||||| |||| ||||||||  |||||||||| |||||||  ||||| || ||||||||||| |||||||||||| |||||  |    
T  13798774 ttaatggtgtttgattatgaaagcttacttgttattatagtgttgtttgatttgaatttgaaggaattttggatttggatgatttgagagagatttttga 13798675  T
Q  145 gatttt 150  Q
    ||||||    
T  13798674 gatttt 13798669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 155
Target Start/End: Original strand, 21615511 - 21615613
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||||||||||||||| ||||||||| |||||||||| ||||||||          |||||||||||||||||||||||| |||||     
T  21615511 ggttaatggtgtttgattatgaaaacttacttgttattgaagtgttgtttgatttgaac----------tttggatttgggtgatttgagagagattttt 21615600  T
Q  143 aagattttagatg 155  Q
     ||||||||||||    
T  21615601 gagattttagatg 21615613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 66 - 150
Target Start/End: Complemental strand, 40592167 - 40592083
Alignment:
Q  66 aacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaattttaaagatttt 150  Q
    |||||| ||||||||| |||||||||| |||||||| ||||| || |||||||||||||||||||| ||| |||||  |||||||    
T  40592167 aacttacttgttattgaagtgttgtttgatttgaacttgaaggaattttggatttgggtgatttgaaagagatttttgagatttt 40592083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 11823936 - 11823879
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaa 100  Q
    |||||||||||||||||||||||| |||| || ||||||||||||||||| |||||||    
T  11823936 ggttaatgatgtttgattatgaaagcttacttattattggagtgttgtttgatttgaa 11823879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 135
Target Start/End: Original strand, 27318452 - 27318544
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagaga 135  Q
    |||||||||||||| |||||||||||||| |||||||||||||||| ||  |||| ||| |||||||| |  |||||||| | || |||||||    
T  27318452 ggttaatgatgttttattatgaaaacttacttgttattggagtgttcttggatttcaacttgaagaaattagggatttggtttatctgagaga 27318544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 97
Target Start/End: Complemental strand, 18146408 - 18146354
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaattt 97  Q
    |||||||| ||| |||||||||||||||| |||||||||||||||||||| ||||    
T  18146408 ggttaatggtgtatgattatgaaaacttacttgttattggagtgttgtttgattt 18146354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 110
Target Start/End: Original strand, 16887077 - 16887142
Alignment:
Q  45 ttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaa 110  Q
    |||||| |||||||||||||||||||| ||||||||| |||| ||||||| |||||| | ||||||    
T  16887077 ttaatggtgtttgattatgaaaacttacttgttattgaagtgctgtttaaattgaacttaaagaaa 16887142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 20379439 - 20379497
Alignment:
Q  79 ttggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaa 137  Q
    |||||||||||||| |||||||  ||||| || |||||| |||||| ||||||||||||    
T  20379439 ttggagtgttgtttgatttgaagttgaaggaattttggagttgggtaatttgagagaaa 20379497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 26603984 - 26604048
Alignment:
Q  73 ttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaa 137  Q
    ||||| |||||||||||||| |||||||  ||||| || |||||| ||| || ||||||||||||    
T  26603984 ttgttgttggagtgttgtttgatttgaagttgaaggaattttggagttgagtaatttgagagaaa 26604048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 30359971 - 30359907
Alignment:
Q  73 ttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaa 137  Q
    ||||| |||||||||||||| |||||||  | ||| || |||||| |||||| ||||||||||||    
T  30359971 ttgttgttggagtgttgtttgatttgaagttcaaggaattttggagttgggtaatttgagagaaa 30359907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 43 - 218
Target Start/End: Original strand, 26618094 - 26618268
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||| ||||| || ||||||||||| |||||||||||| |||||     
T  26618094 ggttaatgatgtttgattatgaaaacttacttgctattggagtgttgtttgatttgaacttgaaggaattttggatttggatgatttgagagagattttg 26618193  T
Q  143 aagattttagatg-gaaagtgagaaaaggaggttttgtccggcctttaaaacgacatgcattgtgagttaactcaca 218  Q
     |||||||||||| ||||  ||| ||| |||||| |||| | ||||||||| |||| | | ||||||||||||||||    
T  26618194 gagattttagatgtgaaa--gaggaaatgaggttatgtctgacctttaaaaggacacgtagtgtgagttaactcaca 26618268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 43 - 155
Target Start/End: Complemental strand, 32734242 - 32734130
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||| ||||||||||| ||||||||||||| |||||| |||||||| ||||| || |||||||||||||||||||||||| |||||     
T  32734242 ggttaatggtgtttgatcatgaaaacttacttgttattggagtattgtttgatttgaacttgaaggaattttggatttgggtgatttgagagagattttt 32734143  T
Q  143 aagattttagatg 155  Q
     ||||||||||||    
T  32734142 gagattttagatg 32734130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 43 - 150
Target Start/End: Complemental strand, 16706282 - 16706175
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||| |||||||||||  ||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||||||| |||||     
T  16706282 ggttaatggtgtttgataatgaaaacttacgtgttattggagtgttgtttgatttgaacttgaaggaattttggatttgggtgatttgagagagattttt 16706183  T
Q  143 aagatttt 150  Q
     |||||||    
T  16706182 gagatttt 16706175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 43 - 150
Target Start/End: Complemental strand, 20147577 - 20147470
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||||||||||||||| || ||||||||||||||||| |||||||| ||||| || |||||||||| ||||||||||||| |||||     
T  20147577 ggttaatggtgtttgattatgaaaacttacttattattggagtgttgtttgatttgaacttgaaggaattttggatttgtgtgatttgagagagattttt 20147478  T
Q  143 aagatttt 150  Q
     |||||||    
T  20147477 gagatttt 20147470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 43 - 150
Target Start/End: Original strand, 42241847 - 42241954
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||| | ||| || |||||||||||||||||||||||| |||||     
T  42241847 ggttaatggtgtttgatcatgaaaacttaattgttattggagtgttgtttgatttgaacttaaaggaattttggatttgggtgatttgagagagattttt 42241946  T
Q  143 aagatttt 150  Q
     |||||||    
T  42241947 gagatttt 42241954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 44 - 193
Target Start/End: Complemental strand, 18878100 - 18877953
Alignment:
Q  44 gttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaattttaa 143  Q
    ||||||| |||||||||||||||||||| |||| ||||||||||| | | ||| |||| ||||| |  |||||||||||||||||||||||||||||||     
T  18878100 gttaatggtgtttgattatgaaaacttacttgtgattggagtgttttcttatt-gaacttgaaggagttttggatttgggtgatttgagagaaattttag 18878002  T
Q  144 agattttagatggaaagtgagaaaaggaggttttgtccggcctttaaaac 193  Q
    ||||||||||||| || |||  ||| |||||| ||| | |||||||||||    
T  18878001 agattttagatgggaaatgatgaaatgaggttatgt-ctgcctttaaaac 18877953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 150
Target Start/End: Complemental strand, 29906039 - 29905933
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||| || ||||||||| |||||||||||||| |||||     
T  29906039 ggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttggattt-ggtgatttgagagagattttt 29905941  T
Q  143 aagatttt 150  Q
     |||||||    
T  29905940 gagatttt 29905933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 40500888 - 40500777
Alignment:
Q  44 gttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaattttaa 143  Q
    |||||||||  ||||||||||||||||| |||||||| |||||||| || |||| ||| |||||||| |  |||| ||| ||||||||||||  ||||||    
T  40500888 gttaatgatacttgattatgaaaacttaattgttatttgagtgttggttgatttaaacttgaagaaattggggatatggttgatttgagagagtttttaa 40500789  T
Q  144 agattttagatg 155  Q
    ||||||||||||    
T  40500788 agattttagatg 40500777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 29110625 - 29110552
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttgg 116  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| || |||||    
T  29110625 ggttaatggtgtttgattatgaaaacttatttgttattggagtgttgtttgatttgaacttgaaggaattttgg 29110552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 44 - 144
Target Start/End: Original strand, 21557374 - 21557474
Alignment:
Q  44 gttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaattttaa 143  Q
    ||||||||||||||||||||| |||||| |||||||||||||| ||||| |||||||| |||||||| |    |||||| ||||||||||||  ||||||    
T  21557374 gttaatgatgtttgattatgacaacttacttgttattggagtgctgtttgatttgaacttgaagaaattagaaatttggatgatttgagagagtttttaa 21557473  T
Q  144 a 144  Q
    |    
T  21557474 a 21557474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 5307115 - 5307170
Alignment:
Q  55 ttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaa 110  Q
    ||||||||||||||||| ||||||||||||||||| || |||||||| ||||||||    
T  5307115 ttgattatgaaaacttacttgttattggagtgttggttgatttgaacttgaagaaa 5307170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 17796894 - 17796961
Alignment:
Q  73 ttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaattt 140  Q
    ||||| ||||||||||||||||||||||  ||||| || ||||||||||||| |||||||||| ||||    
T  17796894 ttgttgttggagtgttgtttaatttgaagttgaaggaattttggatttgggtaatttgagagagattt 17796961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 27651407 - 27651504
Alignment:
Q  45 ttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||| | |||||||||||||||||| || |||||||| |||||||| ||||||   |||| ||| ||| ||||| |||||||| ||||| ||||||    
T  27651407 ttaatggtatttgattatgaaaacttacttattattggaatgttgtttgatttgaggttgaataaattttagatttaggtgatttaagagatatttta 27651504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 22492715 - 22492651
Alignment:
Q  73 ttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaa 137  Q
    ||||| |||||||||||||| |||||||  ||||| || |||||| |||| | ||||||||||||    
T  22492715 ttgttgttggagtgttgtttgatttgaagttgaaggaattttggagttggataatttgagagaaa 22492651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 43 - 217
Target Start/End: Original strand, 15798708 - 15798881
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| ||||| |||||||||||||| |||||||||||||||||||| |||| ||| ||||| || |||||||||||||||||||||||| |||||     
T  15798708 ggttaatggtgtttcattatgaaaacttacttgttattggagtgttgtttgatttaaacttgaaggaattttggatttgggtgatttgagagagattttg 15798807  T
Q  143 aagattttagatggaaagtgagaaaaggaggttttgtccggcctttaaaacgacatgcattgtgagttaactcac 217  Q
     ||||||||||||| || |||| |||  ||||| ||| | ||||||||||  ||| |||  ||||||||| ||||    
T  15798808 gagattttagatgggaaatgaggaaataaggttatgt-ctgcctttaaaataacacgcaacgtgagttaagtcac 15798881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 180
Target Start/End: Complemental strand, 2598805 - 2598670
Alignment:
Q  45 ttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaattttaaa 144  Q
    |||||| |||||||||||||||||||| |||||| ||||||||||||| |||||||| | ||| || |||||||||||||||||||| ||| |||||  |    
T  2598805 ttaatggtgtttgattatgaaaacttacttgttaatggagtgttgtttgatttgaactttaaggaattttggatttgggtgatttgaaagagattttgga 2598706  T
Q  145 gattttagatggaaagtgagaaaaggaggttttgtc 180  Q
    ||||||||||| ||| |||| ||| ||| |||||||    
T  2598705 gattttagatgaaaaatgaggaaatgagattttgtc 2598670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 43 - 153
Target Start/End: Complemental strand, 10975407 - 10975297
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||||||||||||| |||||||||| ||||||||||||| |||| | |||||||| ||||| || ||||||||||| ||||||||||||||||||     
T  10975407 ggttaatgatgtttgattttgaaaacttacttgttattggagtattgtgtgatttgaacttgaaggaattttggatttggttgatttgagagaaattttg 10975308  T
Q  143 aagattttaga 153  Q
     ||||||||||    
T  10975307 gagattttaga 10975297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 44 - 150
Target Start/End: Complemental strand, 33370096 - 33369990
Alignment:
Q  44 gttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaattttaa 143  Q
    ||||||| ||||||||||||||||||||| |||||||| |||||||||| |||||||| ||||| || |||||||||||||||||||||||| |||||      
T  33370096 gttaatggtgtttgattatgaaaacttagatgttattgaagtgttgtttgatttgaacttgaaggaattttggatttgggtgatttgagagagatttttg 33369997  T
Q  144 agatttt 150  Q
    |||||||    
T  33369996 agatttt 33369990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 155
Target Start/End: Original strand, 4113844 - 4113956
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||||||||||| ||| |||||||||||||||||||| |||||||| ||||| || ||| ||||||||||| |||||||| |||||     
T  4113844 ggttaatggtgtttgattatgaaaatttacttgttattggagtgttgtttgatttgaacttgaaggaattttagatttgggtgacttgagagatattttt 4113943  T
Q  143 aagattttagatg 155  Q
     ||||||||||||    
T  4113944 gagattttagatg 4113956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 43 - 150
Target Start/End: Complemental strand, 7081746 - 7081639
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||| || ||||||||||| |||||||||||| |||||     
T  7081746 ggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttggatttggatgatttgagagagattttt 7081647  T
Q  143 aagatttt 150  Q
     |||||||    
T  7081646 gagatttt 7081639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 154
Target Start/End: Original strand, 36317664 - 36317775
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||  ||||| ||||||| ||||| |||||| |||||| |||||     
T  36317664 ggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaagttgaaggaaatttgtatttgtgtgattcgagagagattttt 36317763  T
Q  143 aagattttagat 154  Q
     || ||||||||    
T  36317764 gagtttttagat 36317775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 43 - 142
Target Start/End: Original strand, 23229358 - 23229457
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||||||||||||||| ||||| || ||||||||||| |||||||| ||||| || |||| ||||||||||||| ||||| ||||||    
T  23229358 ggttaatggtgtttgattatgaaaacttacttgtttttagagtgttgtttgatttgaacttgaagtaattttgaatttgggtgatttaagagagatttta 23229457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 43 - 134
Target Start/End: Complemental strand, 12805019 - 12804928
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagag 134  Q
    ||||||||||||||||||||||||||||| |||||| | ||||||||||| |||||||  ||||| || |||| |||| |||||||||||||    
T  12805019 ggttaatgatgtttgattatgaaaacttacttgttactcgagtgttgtttgatttgaatttgaaggaattttgaatttaggtgatttgagag 12804928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 43 - 142
Target Start/End: Original strand, 25361209 - 25361308
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||  |||||||  ||||| || || |||||| | |||||||||||| ||||||    
T  25361209 ggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttggatttgaatttgaaggaatttaggattttgatgatttgagagagatttta 25361308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 28717664 - 28717573
Alignment:
Q  44 gttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagaga 135  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||  |||||||  |||||||| |  | |||||| ||||||||||||    
T  28717664 gttaatgatgtttgattatgaaaacttacttgctattggagtgttgttggatttgaaattgaagaaattaggaatttggttgatttgagaga 28717573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 134
Target Start/End: Complemental strand, 12742200 - 12742113
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagag 134  Q
    |||||||| |||||||||||||||||||    |||| | ||||||||||| |||||||| ||||| || |||| |||| |||||||||||||    
T  12742200 ggttaatggtgtttgattatgaaaactt----gttactcgagtgttgtttgatttgaacttgaaggaattttgaatttaggtgatttgagag 12742113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 22858339 - 22858425
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgattt 129  Q
    |||||||||| ||| ||| |||||||||| |||||||| ||||||||||| |||||||  ||||| || |||| ||||||| |||||    
T  22858339 ggttaatgatatttaattttgaaaacttacttgttattagagtgttgtttgatttgaatttgaaggaattttgaatttgggagattt 22858425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 155
Target Start/End: Original strand, 16418728 - 16418827
Alignment:
Q  55 ttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaattttaaagattttagat 154  Q
    |||||||||||| |||| |||||||| |||||||| ||||||| ||| |||| ||| |  |||||| | |||||| |||||  |||||||||||||||||    
T  16418728 ttgattatgaaa-cttacttgttattagagtgttggttaatttaaacttgaaaaaattgcggatttagatgatttaagagagtttttaaagattttagat 16418826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 3458251 - 3458187
Alignment:
Q  73 ttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaa 137  Q
    ||||| |||||||||||||| |||||||  ||||| || |||||| |||||| ||||||||||||    
T  3458251 ttgttgttggagtgttgtttgatttgaagttgaaggaattttggagttgggtaatttgagagaaa 3458187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 178
Target Start/End: Complemental strand, 19747651 - 19747520
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||  |||||||||||||||||||| |||  ||| ||||||||||| | |||||  ||||| || ||  ||||| |||||||||||||| |||||     
T  19747651 ggttaatagtgtttgattatgaaaacttacttg--attagagtgttgtttga-ttgaagttgaaggaatttcagatttaggtgatttgagagagatttt- 19747556  T
Q  143 aagattttagatggaaagtgagaaaaggaggttttg 178  Q
    | ||||||| |||| || |||||||| |||| ||||    
T  19747555 aggattttaaatgggaaatgagaaaacgaggatttg 19747520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 43 - 155
Target Start/End: Complemental strand, 40414195 - 40414083
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||| ||| |||||     
T  40414195 ggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttggatttgggtgatttgaaagagattttt 40414096  T
Q  143 aagattttagatg 155  Q
     ||||||||||||    
T  40414095 gagattttagatg 40414083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 16575154 - 16575056
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttt 141  Q
    |||||||| |||||||||||||||| ||| |||||||||||||||||||| |||||||| ||||| || |||| ||||||||||||||||||| |||||    
T  16575154 ggttaatggtgtttgattatgaaaaattacttgttattggagtgttgtttgatttgaacttgaaggaattttgaatttgggtgatttgagagagatttt 16575056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 55 - 155
Target Start/End: Original strand, 22843967 - 22844067
Alignment:
Q  55 ttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaattttaaagattttagat 154  Q
    ||||||||||||||||| || |||||||||||||| || |||||||| |||||||| |  |||||||| |||||||||||| ||||||||||||||||||    
T  22843967 ttgattatgaaaacttacttattattggagtgttggttgatttgaacttgaagaaattggggatttggatgatttgagagatattttaaagattttagat 22844066  T
Q  155 g 155  Q
    |    
T  22844067 g 22844067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 181
Target Start/End: Original strand, 14998730 - 14998868
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||| |||| ||| ||||| || |||| | ||||   |||||||||| |||||     
T  14998730 ggttaatggtgtttgattatgaaaacttacttgttattggagtgttgttttattttaacttgaaggaattttgaagttggacaatttgagagagattttg 14998829  T
Q  143 aagattttagatggaaagtgagaaaaggaggttttgtcc 181  Q
     ||||||||||||| || |||| ||| |||||| |||||    
T  14998830 gagattttagatgggaaatgaggaaacgaggttctgtcc 14998868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 43692602 - 43692504
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttt 141  Q
    |||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||  ||||  || |||||||||||||||||||||||| |||||    
T  43692602 ggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaatttgaatgaattttggatttgggtgatttgagagagatttt 43692504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 28706916 - 28706980
Alignment:
Q  73 ttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaa 137  Q
    ||||| |||||||||||||| |||||||  ||||| || |||| | |||||| ||||||||||||    
T  28706916 ttgttgttggagtgttgtttgatttgaagttgaaggaattttgaacttgggtaatttgagagaaa 28706980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 33800307 - 33800371
Alignment:
Q  73 ttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaa 137  Q
    ||||| |||||||||||||| |||||||  ||||| || |||| | |||||| ||||||||||||    
T  33800307 ttgttgttggagtgttgtttgatttgaagttgaaggaattttgaagttgggtaatttgagagaaa 33800371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 43 - 155
Target Start/End: Original strand, 48088307 - 48088419
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| || |||| ||||| ||||||||||||| |||||     
T  48088307 ggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttaatttgaacttgaaggaattttgaatttgagtgatttgagagagattttt 48088406  T
Q  143 aagattttagatg 155  Q
     ||||||||||||    
T  48088407 gagattttagatg 48088419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 43 - 150
Target Start/End: Complemental strand, 37280920 - 37280813
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||||||| |||||     
T  37280920 ggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttggatttgggtgatttgagagagattttt 37280821  T
Q  143 aagatttt 150  Q
     |||||||    
T  37280820 gagatttt 37280813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 7953669 - 7953571
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttt 141  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| ||||  || |||||||||||||||||||||||| |||||    
T  7953669 ggttaatggtgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaacttgaacgaattttggatttgggtgatttgagagagatttt 7953571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 53561354 - 53561256
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttt 141  Q
    ||||||||||||||||| ||||||||| | |||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||||||| |||||    
T  53561354 ggttaatgatgtttgatcatgaaaactcacttgttattggagtgttgtttgatttgaacttgaaggaattttggatttgggtgatttgagagagatttt 53561256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 155
Target Start/End: Original strand, 8634152 - 8634260
Alignment:
Q  47 aatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaattttaaaga 146  Q
    ||||||||||||||||||||||||| |||| |||| |||||||||| |||||||| |||||||  ||||| |||||||||||||||||| |||||  |||    
T  8634152 aatgatgtttgattatgaaaacttacttgtgattgaagtgttgtttgatttgaacttgaagaatttttgggtttgggtgatttgagagagatttttgaga 8634251  T
Q  147 ttttagatg 155  Q
    |||||||||    
T  8634252 ttttagatg 8634260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 14265002 - 14264899
Alignment:
Q  52 tgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaattttaaagatttta 151  Q
    |||||||||||||||||||| |||||| ||||||||||||  |||||||| ||||| || ||| |||||||||||||||||||| |||||  ||||||||    
T  14265002 tgtttgattatgaaaacttacttgttaatggagtgttgttagatttgaacttgaaggaatttttgatttgggtgatttgagagagattttggagatttta 14264903  T
Q  152 gatg 155  Q
    ||||    
T  14264902 gatg 14264899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 155
Target Start/End: Complemental strand, 19234651 - 19234540
Alignment:
Q  44 gttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaattttaa 143  Q
    ||||||| |||||||||||||||||||| |||||| |||||||| |||| |||||||| ||||  || ||||||||||||| ||||||||||||||||      
T  19234651 gttaatggtgtttgattatgaaaacttacttgttaatggagtgtggtttgatttgaacttgaaagaattttggatttgggtaatttgagagaaatttttg 19234552  T
Q  144 agattttagatg 155  Q
    |||||| |||||    
T  19234551 agatttaagatg 19234540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 44 - 155
Target Start/End: Original strand, 36722111 - 36722222
Alignment:
Q  44 gttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaattttaa 143  Q
    ||||||| |||||||| ||||||||||| |||||||||||||||||||| ||| |||| ||||  || |||||||||||||||||||| ||| |||||      
T  36722111 gttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgattcgaacttgaatgaattttggatttgggtgatttgaaagagatttttg 36722210  T
Q  144 agattttagatg 155  Q
    ||||||||||||    
T  36722211 agattttagatg 36722222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 25577341 - 25577427
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgattt 129  Q
    |||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||    
T  25577341 ggttaatggtgtttgatcatgaaaacttatttgttattggagtgttgtttgatttgaacttgaaggaattttggatttgggtgattt 25577427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 43 - 154
Target Start/End: Original strand, 39417709 - 39417819
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||| | ||| || |||| ||||||||||||||| ||| |||||     
T  39417709 ggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaac-ttaaggaattttgaatttgggtgatttgaaagagattttt 39417807  T
Q  143 aagattttagat 154  Q
     |||||||||||    
T  39417808 gagattttagat 39417819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 6465089 - 6465153
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaag 107  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||| |||||    
T  6465089 ggttaatgctgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaacttgaag 6465153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 44 - 149
Target Start/End: Complemental strand, 17370397 - 17370293
Alignment:
Q  44 gttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttgga-tttgggtgatttgagagaaatttta 142  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||| || |||||||| | ||||||  ||||| ||||| ||||||||||||  |||||    
T  17370397 gttaatggtgtttgattatgaaaacttacttgttattggagtgttgattgatttgaacttaaagaaa--ttggagtttggatgatttgagagagttttta 17370300  T
Q  143 aagattt 149  Q
     ||||||    
T  17370299 gagattt 17370293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 133
Target Start/End: Complemental strand, 13626409 - 13626320
Alignment:
Q  44 gttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgaga 133  Q
    ||||||| ||||||||||| |||||||| ||||||||| |||||||||| |||||||| | |||||| |  |||||||| ||||||||||    
T  13626409 gttaatggtgtttgattataaaaacttacttgttattgaagtgttgtttgatttgaactttaagaaattagggatttggttgatttgaga 13626320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 43687694 - 43687604
Alignment:
Q  44 gttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagaga 135  Q
    ||||||||||||||||||| |||  ||| || ||||||||||||||||| |||||||| ||||| || |||| |||||| ||||||||||||    
T  43687694 gttaatgatgtttgattattaaag-ttactttttattggagtgttgtttgatttgaacttgaaggaattttgaatttggttgatttgagaga 43687604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 121
Target Start/End: Original strand, 1639221 - 1639298
Alignment:
Q  44 gttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttg 121  Q
    ||||||||| ||||||||||| |||||| |||||||||||||||||||  |||||||  ||||||||||  |||||||    
T  1639221 gttaatgatatttgattatgataacttacttgttattggagtgttgttggatttgaatttgaagaaaataaggatttg 1639298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 42950825 - 42950889
Alignment:
Q  73 ttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaa 137  Q
    ||||| |||||||||||||| |||||||  ||||| || |||||| |||||| ||||||||||||    
T  42950825 ttgttgttggagtgttgtttgatttgaagttgaaggaattttggagttgggtaatttgagagaaa 42950889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 43 - 141
Target Start/End: Complemental strand, 800624 - 800526
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttt 141  Q
    |||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||||||| |||||    
T  800624 ggttaatggtgtttgatcatgaaaacttacttgttattggagtgttgtttgatttgaacttgaaggaattttggatttgggtgatttgagagagatttt 800526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 154
Target Start/End: Original strand, 3098124 - 3098233
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| | ||| || ||||||||| | |||||||||||| |||||     
T  3098124 ggttaatgatgtttgattatgaaaacttacttgttattggagtgttgtttgatttgaacttaaaggaattttggatttagatgatttgagagagatttt- 3098222  T
Q  143 aagattttagat 154  Q
     |||||||||||    
T  3098223 -agattttagat 3098233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 52 - 155
Target Start/End: Complemental strand, 24559448 - 24559345
Alignment:
Q  52 tgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaattttaaagatttta 151  Q
    |||||||||||||||||||| ||||||||| |||||||||| ||||||||  ||||||| |  |||||||| |||||||| |||  ||||  ||||||||    
T  24559448 tgtttgattatgaaaacttacttgttattgaagtgttgtttgatttgaactggaagaaattagggatttggttgatttgaaagagtttttggagatttta 24559349  T
Q  152 gatg 155  Q
    ||||    
T  24559348 gatg 24559345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 44 - 142
Target Start/End: Complemental strand, 5570729 - 5570631
Alignment:
Q  44 gttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||  ||||||||| ||||||||| |||||||||||||||||||| |||||||| ||||  || | || ||||||||||||||||| | ||||||    
T  5570729 gttaatgtcgtttgattacgaaaacttacttgttattggagtgttgtttgatttgaacttgaaagaattatgaatttgggtgatttgagaaagatttta 5570631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 155
Target Start/End: Complemental strand, 4286639 - 4286561
Alignment:
Q  77 tattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaattttaaagattttagatg 155  Q
    |||||||||||||||| |||||||| ||||| || ||| ||||||| |||||||||||| |||||  ||||||||||||    
T  4286639 tattggagtgttgtttgatttgaacttgaaggaatttttgatttggatgatttgagagagatttttgagattttagatg 4286561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 133
Target Start/End: Original strand, 446097 - 446186
Alignment:
Q  44 gttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgaga 133  Q
    ||||||| ||||||| |||||||||||| || |||||| ||| |||||| |||||||| ||||  || |||| |||||||||||||||||    
T  446097 gttaatggtgtttgactatgaaaacttacttattattgaagtattgtttgatttgaacttgaaataattttgaatttgggtgatttgaga 446186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 101
Target Start/End: Original strand, 18744579 - 18744637
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaac 101  Q
    |||| ||| |||||||||||||||||||| ||||||||||||| |||||| ||||||||    
T  18744579 ggttgatgttgtttgattatgaaaacttacttgttattggagttttgtttgatttgaac 18744637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 155
Target Start/End: Complemental strand, 19242381 - 19242284
Alignment:
Q  58 attatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaattttaaagattttagatg 155  Q
    |||||||| ||||| || |||||| ||||||| || |||||||| ||||||||     ||||||| ||||||||||||  ||||| ||||||||||||    
T  19242381 attatgaatacttacttattattgcagtgttggttgatttgaacttgaagaaatcgaagatttggatgatttgagagagtttttagagattttagatg 19242284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 28050850 - 28050777
Alignment:
Q  62 tgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagaga 135  Q
    |||||||||| |||||||||||||||||||| |||||||  ||||| || || | ||||| || ||||||||||    
T  28050850 tgaaaacttacttgttattggagtgttgtttgatttgaagttgaaggaatttcgaatttgagtaatttgagaga 28050777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 34208373 - 34208294
Alignment:
Q  55 ttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagaga 135  Q
    ||||||||||||||||| |||||||||||| |||| || |||||||| |||||||| |  || ||| | ||||||||||||    
T  34208373 ttgattatgaaaacttacttgttattggagcgttg-ttgatttgaacttgaagaaattgagggttttgatgatttgagaga 34208294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 43 - 156
Target Start/End: Complemental strand, 4801 - 4689
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||| || |||||||  ||||| || ||||||| |||||||||||||||| |||||     
T  4801 ggttaatggtgtttgattatgaaaacttacttgttattggagtgttg-ttgatttgaagttgaaggaattttggatctgggtgatttgagagagattttt 4703  T
Q  143 aagattttagatgg 156  Q
     |||||||||||||    
T  4702 gagattttagatgg 4689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0489 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0489
Description:

Target: scaffold0489; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 43 - 155
Target Start/End: Complemental strand, 7617 - 7505
Alignment:
Q  43 ggttaatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaatttta 142  Q
    |||||||| ||| ||||| |||||||||| |||||| ||||||||||||| |||||||| || |  || ||||||||| | |||||||||||| |||||     
T  7617 ggttaatggtgtctgattttgaaaacttacttgttactggagtgttgtttgatttgaacttgtaagaattttggatttagttgatttgagagagattttg 7518  T
Q  143 aagattttagatg 155  Q
     ||||||||||||    
T  7517 gagattttagatg 7505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 39378 - 39325
Alignment:
Q  47 aatgatgtttgattatgaaaacttagttgttattggagtgttgtttaatttgaa 100  Q
    ||||||||||||||||||||||||| |||| |||| |||||||||| |||||||    
T  39378 aatgatgtttgattatgaaaacttacttgtgattgaagtgttgtttgatttgaa 39325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 165 - 222
Alignment:
Q  80 tggagtgttgtttaatttgaacgtgaagaaaatttggatttgggtgatttgagagaaa 137  Q
    ||||||||||||| |||||||  |||||||| |||||| |||| | ||||||||||||    
T  165 tggagtgttgtttgatttgaagttgaagaaattttggagttggataatttgagagaaa 222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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