View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8267_low_7 (Length: 239)
Name: NF8267_low_7
Description: NF8267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8267_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 1438088 - 1437866
Alignment:
| Q |
1 |
tgttaaaatggtataaatgtgattttctaaaactgcatatgaaaattaaaaggaggaaaacaatatagatttgttaattacctatttacttttataggag |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1438088 |
tgttaaaatggtataaatgtgattttctaaaactgcatatgaaaattaaaaggaggaaaacaatatagatttgttaattacctatttacttttataggag |
1437989 |
T |
|
| Q |
101 |
aaaattagtatatttttacaaaatgcatacctggaatccccaaaacagtgcatacacatatttgctgatcaccctagtttctatcgtaagtggtacagca |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1437988 |
aaaattagtatatttttacaaaatgcatacctggaatccccaaaacagtgcatacacatatttgctgatcaccctagtttctatcgtaagtggtacagca |
1437889 |
T |
|
| Q |
201 |
ttggcatagattccataagaaaa |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
1437888 |
ttggcatagattccataagaaaa |
1437866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 121 - 223
Target Start/End: Complemental strand, 27910185 - 27910083
Alignment:
| Q |
121 |
aaatgcatacctggaatccccaaaacagtgcatacacatatttgctgatcaccctagtttctatcgtaagtggtacagcattggcatagattccataaga |
220 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||| |||||||||| |||||| ||||||||||||||||| |
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| T |
27910185 |
aaatgcatacctggaatccccaaaagagtgcatacacatatttgttgatcaccttagtttctatagtaagtggtatagcatttgcatagattccataaga |
27910086 |
T |
|
| Q |
221 |
aaa |
223 |
Q |
| |
|
||| |
|
|
| T |
27910085 |
aaa |
27910083 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 28069828 - 28069727
Alignment:
| Q |
122 |
aatgcatacctggaatccccaaaacagtgcatacacatatttgctgatcaccctagtttctatcgtaagtggtacagcattggcatagattccataagaa |
221 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||| |||||||| |||||||||| |||||||||| |||||| |||||||||||||||||| |
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|
| T |
28069828 |
aatgcatacctgaaatccccaaaagagtgcatacacatatttgttgatcaccttagtttctatagtaagtggtatagcatttgcatagattccataagaa |
28069729 |
T |
|
| Q |
222 |
aa |
223 |
Q |
| |
|
|| |
|
|
| T |
28069728 |
aa |
28069727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 27998988 - 27998885
Alignment:
| Q |
120 |
aaaatgcatacctggaatccccaaaacagtgcatacacatatttgctgatcaccctagtttctatcgtaagtggtacagcattggcatagattccataag |
219 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||| |||||||||| |||||| |||| |||||||||| |
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|
| T |
27998988 |
aaaatgtatacctggaatccccaaaagagtgcatacacatatttgttgatcaccttagtttctatagtaagtggtatggcattgccataaattccataag |
27998889 |
T |
|
| Q |
220 |
aaaa |
223 |
Q |
| |
|
|||| |
|
|
| T |
27998888 |
aaaa |
27998885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 118 - 223
Target Start/End: Complemental strand, 28014459 - 28014354
Alignment:
| Q |
118 |
acaaaatgcatacctggaatccccaaaacagtgcatacacatatttgctgatcaccctagtttctatcgtaagtggtacagcattggcatagattccata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| |||||| ||||| ||||| |||||||||| | |||||||||| ||||||||||||||||||||| |
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|
| T |
28014459 |
acaaaatgcatacctggaatccccaaaagagtgaatacacgtattttttgatccacctagtttctttagtaagtggtatagcattggcatagattccata |
28014360 |
T |
|
| Q |
218 |
agaaaa |
223 |
Q |
| |
|
|||||| |
|
|
| T |
28014359 |
agaaaa |
28014354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 28088796 - 28088715
Alignment:
| Q |
119 |
caaaatgcatacctggaatccccaaaacagtgcatacacatatttgctgatcaccctagtttctatcgtaagtggtacagca |
200 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||| |||||||| |
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|
| T |
28088796 |
caaaatgcatacctgaaatccccaaaagagtgcatacacatatttgttgaccaccctagtttctatcgtaagtagtacagca |
28088715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 118 - 218
Target Start/End: Complemental strand, 28030187 - 28030087
Alignment:
| Q |
118 |
acaaaatgcatacctggaatccccaaaacagtgcatacacatatttgctgatcaccctagtttctatcgtaagtggtacagcattggcatagattccata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||| |||||| || |||| |||||||||| |||||| |||||||||||||||| |||||||| |
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|
| T |
28030187 |
acaaaatgcatacctggaatccccaaaagactgcatacatatatttcttggccaccgtagtttctatagtaagttgtacagcattggcatatattccata |
28030088 |
T |
|
| Q |
218 |
a |
218 |
Q |
| |
|
| |
|
|
| T |
28030087 |
a |
28030087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 28089379 - 28089289
Alignment:
| Q |
1 |
tgttaaaatggtataaatgtgattttctaaaactgcatatgaaaattaaaaggaggaaaacaatatagatttgttaattacctatttactttta |
94 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||| ||||||| | |||||||||||||||| ||||||||||||| ||||||||||| |
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|
| T |
28089379 |
tgttaaaatggtataaatgtgatttggtgaaactgcatacgaaaattta---gaggaaaacaatatagttttgttaattacccatttactttta |
28089289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 218
Target Start/End: Complemental strand, 36596892 - 36596789
Alignment:
| Q |
118 |
acaaaatgcatacctggaatccccaaaacagtgcatacacatatttgctgatcaccctagtttctatcgtaa---gtggtacagcattggcatagattcc |
214 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||| ||||||||| | |||||| ||||||||| |||| || |||| |||||||||| ||||| |
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|
| T |
36596892 |
acaaaatgtatacctggaatccccaaaagagtgcatgcacatatttctcggtcacccaagtttctatagtaaattgtactacaacattggcatatattcc |
36596793 |
T |
|
| Q |
215 |
ataa |
218 |
Q |
| |
|
|||| |
|
|
| T |
36596792 |
ataa |
36596789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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