View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8268_high_1 (Length: 445)
Name: NF8268_high_1
Description: NF8268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8268_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 141; Significance: 9e-74; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 214 - 422
Target Start/End: Original strand, 39762815 - 39763022
Alignment:
| Q |
214 |
ttatacaggcagtgaactaccttgaactttgatagacagaagaacagtacaaaagaaaattctctagctccagatttttggattcccttcaagtataaac |
313 |
Q |
| |
|
|||||||||||||| |||| |||||||| || || ||| ||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39762815 |
ttatacaggcagtgtactatcttgaactc-gacaggcaggagaacagaacaaaagaaaactctcgagctccagatttttggattcccttcaagtataaac |
39762913 |
T |
|
| Q |
314 |
cgacacaaatattgattgatgaaagagatggatccattttcggtgcaatatttgaatgggatcggtctgcagcattatctgagttcaaaccattcaaacc |
413 |
Q |
| |
|
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
39762914 |
ctacacaaatattgattgatgaaagagatgggtccattttcggtgcaatatttgaatgggatcggtctgcagcattgtctgaattcaaaccatttaaacc |
39763013 |
T |
|
| Q |
414 |
aatcggtgc |
422 |
Q |
| |
|
||| ||||| |
|
|
| T |
39763014 |
aattggtgc |
39763022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 310 - 414
Target Start/End: Original strand, 39756486 - 39756590
Alignment:
| Q |
310 |
aaaccgacacaaatattgattgatgaaagagatggatccattttcggtgcaatatttgaatgggatcggtctgcagcattatctgagttcaaaccattca |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
39756486 |
aaaccgacacaaatattgattgatgaaagagatgggtccattttcggtgcaatatttgaatgggatcggtctgcagcattgtctgaattcaaaccattca |
39756585 |
T |
|
| Q |
410 |
aacca |
414 |
Q |
| |
|
||||| |
|
|
| T |
39756586 |
aacca |
39756590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 387
Target Start/End: Original strand, 15545982 - 15546154
Alignment:
| Q |
214 |
ttatacaggcagtgaactaccttgaactttgatagacagaagaacagtacaaaagaaaattctctagctccagatttttggattcccttcaagtataaac |
313 |
Q |
| |
|
|||||||||||||| ||| ||||||||| ||| |||| |||| | ||| ||||||| ||||||||||| | | ||||||||||||||||| || | |
|
|
| T |
15545982 |
ttatacaggcagtgtacttgcttgaactt-gatcgacaagagaaacgaacaccagaaaatgctctagctccaaactggtggattcccttcaagtacaagc |
15546080 |
T |
|
| Q |
314 |
cgacacaaatattgattgatgaaagagatggatccattttcggtgcaatatttgaatgggatcggtctgcagca |
387 |
Q |
| |
|
||| ||| | |||| || |||||||| || || ||||||||||||||| | |||||||| | ||||||||| |
|
|
| T |
15546081 |
taacaaaaacactgatagacgaaagagacggttcaattttcggtgcaatactcgaatgggacagatctgcagca |
15546154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University