View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8268_high_2 (Length: 308)
Name: NF8268_high_2
Description: NF8268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8268_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 33029164 - 33028891
Alignment:
| Q |
19 |
cttaattcattgtacatccttttacacgtagtttctgtcaaagtaagcttatcatagtgttgaacctcttttatggtcttaccttctgattctaatatga |
118 |
Q |
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| T |
33029164 |
cttaattcattgtacatccttttacatgtagtttctgtcaaagtaagcttatcatagtgttgaacctcttttatggtcttaccttctgattctaatagga |
33029065 |
T |
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| Q |
119 |
ccagagagggattgatcgagtaaagcaaccttctatcagaataggaaaccaaataaagggacagaattgtgacttgggttcttcaaatttttcaaaccat |
218 |
Q |
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| T |
33029064 |
taagagagggattgatcgagtaaagcaaccttctatcagaataggaaaccaaataaagggacagaattgtgacttgggttcttcaaatttttcaaaccat |
33028965 |
T |
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| Q |
219 |
ttttcagctttttgattatatgcttctgttagaacaatacttatcaggaaagggaggttggtttagtttggaaa |
292 |
Q |
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| T |
33028964 |
ttttcagctttttgattctatgcttctgttagaacaatacttatcaggaaagggagcttggtttactttggaaa |
33028891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 33040512 - 33040433
Alignment:
| Q |
56 |
tcaaagtaagcttatcatagtgttgaacctcttttatggtcttaccttctgattctaatatgaccagagagggattgatc |
135 |
Q |
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| T |
33040512 |
tcaaagtaagcctatcatagtgttgaacctcttttatggtcttaccttctgattctaatagtacaagagagggattgatc |
33040433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 56 - 135
Target Start/End: Complemental strand, 33022918 - 33022839
Alignment:
| Q |
56 |
tcaaagtaagcttatcatagtgttgaacctcttttatggtcttaccttctgattctaatatgaccagagagggattgatc |
135 |
Q |
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| T |
33022918 |
tcaaagtaagcctatcatagtgttgaacctcttttatggtcatactttctgattctaataggataagagatggattgatc |
33022839 |
T |
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