View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8268_low_5 (Length: 276)

Name: NF8268_low_5
Description: NF8268
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8268_low_5
NF8268_low_5
[»] chr5 (9 HSPs)
chr5 (108-194)||(41635395-41635481)
chr5 (37-108)||(41636405-41636476)
chr5 (161-258)||(41635298-41635395)
chr5 (199-258)||(26074889-26074948)
chr5 (199-246)||(26900089-26900136)
chr5 (202-258)||(26074607-26074663)
chr5 (199-258)||(6224188-6224247)
chr5 (199-258)||(34753132-34753191)
chr5 (197-239)||(36527209-36527251)
[»] chr6 (8 HSPs)
chr6 (199-258)||(16108055-16108114)
chr6 (199-258)||(2579212-2579271)
chr6 (199-258)||(16454899-16454958)
chr6 (199-258)||(16454567-16454626)
chr6 (192-258)||(2579979-2580045)
chr6 (199-258)||(16107670-16107729)
chr6 (217-259)||(3409670-3409712)
chr6 (194-258)||(2843541-2843605)
[»] chr4 (12 HSPs)
chr4 (200-258)||(20825829-20825887)
chr4 (199-249)||(39404390-39404440)
chr4 (197-258)||(41707569-41707630)
chr4 (199-259)||(1731751-1731811)
chr4 (193-258)||(34646754-34646819)
chr4 (199-258)||(3341120-3341179)
chr4 (199-258)||(36572011-36572070)
chr4 (199-258)||(36608766-36608825)
chr4 (196-258)||(3700354-3700416)
chr4 (200-258)||(36629230-36629288)
chr4 (200-258)||(39792965-39793023)
chr4 (197-249)||(45050591-45050643)
[»] chr1 (6 HSPs)
chr1 (197-258)||(41157365-41157426)
chr1 (199-258)||(17294569-17294628)
chr1 (199-249)||(35154155-35154205)
chr1 (199-258)||(26661629-26661688)
chr1 (199-258)||(26662005-26662064)
chr1 (199-258)||(34649430-34649489)
[»] chr8 (12 HSPs)
chr8 (199-258)||(30359601-30359660)
chr8 (194-249)||(43274895-43274950)
chr8 (192-258)||(3038397-3038463)
chr8 (199-259)||(70380-70439)
chr8 (200-260)||(9308970-9309032)
chr8 (199-258)||(9309347-9309406)
chr8 (199-258)||(25561923-25561982)
chr8 (199-258)||(30359263-30359322)
chr8 (199-258)||(34834868-34834927)
chr8 (217-258)||(1013978-1014019)
chr8 (199-259)||(8794103-8794163)
chr8 (199-258)||(9482711-9482768)
[»] chr7 (8 HSPs)
chr7 (199-258)||(30245069-30245128)
chr7 (199-258)||(30245486-30245545)
chr7 (199-258)||(45433233-45433292)
chr7 (199-249)||(30244262-30244312)
chr7 (199-258)||(7517572-7517631)
chr7 (199-258)||(34218141-34218200)
chr7 (199-258)||(45434628-45434687)
chr7 (200-249)||(40094510-40094559)
[»] chr3 (16 HSPs)
chr3 (199-258)||(3135568-3135627)
chr3 (199-258)||(29645009-29645068)
chr3 (199-258)||(37990746-37990805)
chr3 (199-258)||(43346898-43346957)
chr3 (199-249)||(22304064-22304114)
chr3 (199-249)||(25755386-25755436)
chr3 (199-259)||(15773184-15773244)
chr3 (199-251)||(32463015-32463067)
chr3 (199-258)||(42342495-42342554)
chr3 (200-258)||(35946515-35946573)
chr3 (199-249)||(52634668-52634718)
chr3 (200-249)||(8327897-8327946)
chr3 (199-244)||(45901705-45901750)
chr3 (197-258)||(54017923-54017984)
chr3 (199-251)||(32462673-32462725)
chr3 (198-258)||(45395760-45395820)
[»] chr2 (5 HSPs)
chr2 (199-258)||(15880255-15880314)
chr2 (199-249)||(6421296-6421346)
chr2 (202-258)||(40733512-40733568)
chr2 (199-258)||(6421377-6421436)
chr2 (195-239)||(43443108-43443152)
[»] scaffold0391 (2 HSPs)
scaffold0391 (199-258)||(1213-1272)
scaffold0391 (199-261)||(3089-3151)


Alignment Details
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 108 - 194
Target Start/End: Complemental strand, 41635481 - 41635395
Alignment:
Q  108 atatatccccactcgggatggttggttggtccttggttttgttatcccttgtaaatttgtacttgtatggtcatctgttaagaaata 194  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  41635481 atatatccccacttgggatggttggttggtccttggttttgttatcccttgtaaatttgtacttgtttggtcatctgataagaaata 41635395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 41636476 - 41636405
Alignment:
Q  37 tgaagagaaatggcctaacttacctagaatgacacgtggtttattagtgggactttctgtcttgtagaatta 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41636476 tgaaaagaaatggcctaacttacctagaatgacacgtggtttattagtgggactttctgtcttgtagaatta 41636405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 258
Target Start/End: Complemental strand, 41635395 - 41635298
Alignment:
Q  161 aatttgtacttgtatggtcatctgttaagaaatatttattgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    |||||||| |||| |||||||||| |||||||||||| |||||||||| || | | ||||||||||| | ||||||||||||||||||| ||| ||||    
T  41635395 aatttgtatttgtttggtcatctgataagaaatatttgttgttgtgtataagtatgagttatatgtttcccatcagataaaagagtaaatgttgaaca 41635298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 26074948 - 26074889
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||||||| ||| |||||||||| ||||||| |||||||||||||| ||| ||||    
T  26074948 ttgttgtgtacaagtgtgagttatatgtcccacatcggataaaagagtaaaggttgaaca 26074889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 246
Target Start/End: Complemental strand, 26900136 - 26900089
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagt 246  Q
    ||||||||||||||| | |||||||||| |||||||||||||||||||    
T  26900136 ttgttgtgtacaaatttgagttatatgtcccacatcagataaaagagt 26900089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 26074607 - 26074663
Alignment:
Q  202 ttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    |||||||||| ||| |||||||||||||| ||| |||||||||||||| ||| ||||    
T  26074607 ttgtgtacaagtgtgagttatatgttccatatcggataaaagagtaaaggttgaaca 26074663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 6224188 - 6224247
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||||||| ||| |||||||||| |||| || |||||||||||||| ||| ||||    
T  6224188 ttgttgtgtacaagtgtgagttatatgtcccacttcggataaaagagtaaaggttgaaca 6224247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 34753191 - 34753132
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||||||||||| |||||||||| ||||||  |||| || |||||||||| ||||    
T  34753191 ttgttgtgtacaaatgtaagttatatgtcccacattggatagaaaagtaaaagttgaaca 34753132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 36527251 - 36527209
Alignment:
Q  197 tattgttgtgtacaaatgtcagttatatgttccacatcagata 239  Q
    ||||||||||||||| ||| |||||||||| ||||||||||||    
T  36527251 tattgttgtgtacaagtgtgagttatatgtcccacatcagata 36527209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 16108055 - 16108114
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||||||| ||| ||||    
T  16108055 ttgttgtgtacaagtgtgagttatatgttccacatcagataaaagagtaaatgttgaaca 16108114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 2579271 - 2579212
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||||||| ||| |||||||||| ||||||| |||||||||||||||||| ||||    
T  2579271 ttgttgtgtacaagtgttagttatatgtcccacatcggataaaagagtaaaagttgaaca 2579212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 16454899 - 16454958
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||||||||||| |||||| ||| |||||||||||||||||||||| ||| ||||    
T  16454899 ttgttgtgtacaaatgtgagttatgtgtcccacatcagataaaagagtaaaggttgaaca 16454958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 16454567 - 16454626
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||||||| ||| |||||| ||| ||||||||||||||||| |||||||| ||||    
T  16454567 ttgttgtgtacaagtgtgagttatgtgtcccacatcagataaaagaataaaagttgaaca 16454626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 2580045 - 2579979
Alignment:
Q  192 atatttattgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    |||||| ||||||||| ||| ||| |||||||||| ||||||| |||||||||||||| ||| ||||    
T  2580045 atatttgttgttgtgtgcaagtgtgagttatatgtcccacatcggataaaagagtaaaggttgaaca 2579979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 16107670 - 16107729
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||||||| ||| ||||||||||  |||||| ||||||| |||||| ||||||||    
T  16107670 ttgttgtgtacaagtgtgagttatatgtgtcacatcggataaaaaagtaaaggttaaaca 16107729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 3409670 - 3409712
Alignment:
Q  217 agttatatgttccacatcagataaaagagtaaaagttaaacat 259  Q
    |||||||||| ||||||||||||||| |||||||||| |||||    
T  3409670 agttatatgtaccacatcagataaaatagtaaaagttgaacat 3409712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 2843541 - 2843605
Alignment:
Q  194 atttattgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    |||| |||||||| |||| ||| ||||||||||| |||||| ||||||| | |||||||| ||||    
T  2843541 atttgttgttgtgcacaattgtgagttatatgtttcacatcggataaaataataaaagttgaaca 2843605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 20825829 - 20825887
Alignment:
Q  200 tgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||| ||| ||||    
T  20825829 tgttgtgtacaaatgtgagttatatgttccacatcggataaaagagtaaaggttgaaca 20825887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 39404390 - 39404440
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaa 249  Q
    ||||||||||||| ||| |||||||||| ||||||||||||||||||||||    
T  39404390 ttgttgtgtacaagtgtgagttatatgtcccacatcagataaaagagtaaa 39404440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 41707630 - 41707569
Alignment:
Q  197 tattgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||||||||| ||| |||||||||| ||||||| |||||||||||||| ||| ||||    
T  41707630 tattgttgtgtacaagtgtgagttatatgtcccacatcggataaaagagtaaaggttgaaca 41707569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 199 - 259
Target Start/End: Complemental strand, 1731811 - 1731751
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaacat 259  Q
    ||||||||| ||||||| |||||||||| ||||||||||||||| |||||| ||| |||||    
T  1731811 ttgttgtgtgcaaatgtgagttatatgtcccacatcagataaaacagtaaaggttgaacat 1731751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 258
Target Start/End: Complemental strand, 34646819 - 34646754
Alignment:
Q  193 tatttattgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||| ||||||||||||| ||| |||||||||| ||||||| ||||||| |||||| ||| ||||    
T  34646819 tatttgttgttgtgtacaagtgtgagttatatgtcccacatcggataaaacagtaaatgttgaaca 34646754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 3341120 - 3341179
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||| ||| ||| |||||||||| ||||||  |||||||||||||| ||||||||    
T  3341120 ttgttgtgtgcaagtgtgagttatatgtcccacattggataaaagagtaaaggttaaaca 3341179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 36572011 - 36572070
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||||||| ||| |||||||||| |||||||  ||||||||||||| ||| ||||    
T  36572011 ttgttgtgtacaagtgtgagttatatgtcccacatcgaataaaagagtaaatgttgaaca 36572070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 36608825 - 36608766
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||| ||| ||| |||||||||| | ||||| |||||||||||||||||| ||||    
T  36608825 ttgttgtgtgcaagtgtgagttatatgtccaacatcggataaaagagtaaaagttgaaca 36608766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 3700354 - 3700416
Alignment:
Q  196 ttattgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    |||||||||||| ||| ||| |||||||||| | ||||| |||||||||||||| ||| ||||    
T  3700354 ttattgttgtgtgcaagtgtgagttatatgtcctacatcggataaaagagtaaatgttgaaca 3700416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 36629230 - 36629288
Alignment:
Q  200 tgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    |||||||| ||| ||| |||||||||| ||||||| |||| || |||||||||||||||    
T  36629230 tgttgtgttcaagtgtgagttatatgtcccacatcggatagaaaagtaaaagttaaaca 36629288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 258
Target Start/End: Complemental strand, 39793023 - 39792965
Alignment:
Q  200 tgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    |||||||||||| ||| |||||||||| |||||||||||| || |||||| ||| ||||    
T  39793023 tgttgtgtacaagtgtgagttatatgtcccacatcagatagaaaagtaaatgttgaaca 39792965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 249
Target Start/End: Original strand, 45050591 - 45050643
Alignment:
Q  197 tattgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaa 249  Q
    ||||||||||| ||| ||| ||||||||||  ||||||| |||||||||||||    
T  45050591 tattgttgtgtgcaagtgtgagttatatgtctcacatcaaataaaagagtaaa 45050643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 41157365 - 41157426
Alignment:
Q  197 tattgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||||| ||| ||| |||||||||| |||||||||||||||||||||||||| ||||    
T  41157365 tattgttgtgtgcaagtgtgagttatatgtcccacatcagataaaagagtaaaagttgaaca 41157426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 17294569 - 17294628
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||||||| ||| |||||||||| ||||||| |||||||||||||| ||| ||||    
T  17294569 ttgttgtgtacaagtgtgagttatatgtcccacatcggataaaagagtaaaggttgaaca 17294628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 35154205 - 35154155
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaa 249  Q
    ||||||||| ||| ||| |||||||||| ||||||||||||||||||||||    
T  35154205 ttgttgtgtgcaagtgtgagttatatgtcccacatcagataaaagagtaaa 35154155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 26661688 - 26661629
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||||||| ||| |||||||||| ||||||| | |||||||||||| ||| ||||    
T  26661688 ttgttgtgtacaagtgtgagttatatgtcccacatcgggtaaaagagtaaaggttgaaca 26661629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 26662064 - 26662005
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||||||| ||| |||||||| | ||| |||||||||||||||||| ||| ||||    
T  26662064 ttgttgtgtacaagtgtgagttatatatcccatatcagataaaagagtaaaggttgaaca 26662005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 34649430 - 34649489
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||| ||||| ||| |||||||||| ||||||| |||||||||||||| ||| ||||    
T  34649430 ttgttgtatacaagtgtgagttatatgtcccacatcggataaaagagtaaaggttgaaca 34649489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 30359601 - 30359660
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||||||| ||| ||||||||||  ||||||||||||||||||||||||| ||||    
T  30359601 ttgttgtgtacaagtgtgagttatatgtctcacatcagataaaagagtaaaagttgaaca 30359660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 194 - 249
Target Start/End: Complemental strand, 43274950 - 43274895
Alignment:
Q  194 atttattgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaa 249  Q
    |||| |||||||||| || ||| ||||||||||| |||||||||||||||||||||    
T  43274950 atttgttgttgtgtataagtgtgagttatatgtttcacatcagataaaagagtaaa 43274895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 3038463 - 3038397
Alignment:
Q  192 atatttattgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    |||||| ||||||||||||| ||| |||||||||| ||||||| ||||||| |||||| ||| ||||    
T  3038463 atatttgttgttgtgtacaagtgtgagttatatgtcccacatcggataaaatagtaaaggttgaaca 3038397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 259
Target Start/End: Complemental strand, 70439 - 70380
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaacat 259  Q
    |||||||||||||| || |||||||||| ||||||| |||||||||||||| ||| |||||    
T  70439 ttgttgtgtacaaa-gtgagttatatgtcccacatcggataaaagagtaaatgttgaacat 70380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 9308970 - 9309032
Alignment:
Q  200 tgttgtgtacaaatgtcagttatatgttc--cacatcagataaaagagtaaaagttaaacatg 260  Q
    |||||||| ||| ||| |||||||||| |  ||||||||||||||||||||||||| ||||||    
T  9308970 tgttgtgtgcaagtgtgagttatatgtcctacacatcagataaaagagtaaaagttgaacatg 9309032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 9309347 - 9309406
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||| ||| ||| |||||||||| ||||||| |||||||||||||| ||| ||||    
T  9309347 ttgttgtgtgcaagtgtgagttatatgtcccacatcggataaaagagtaaatgttgaaca 9309406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 25561982 - 25561923
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||| ||||| ||| |||||||||| ||||||| |||||||||||||| ||| ||||    
T  25561982 ttgttgtctacaagtgtgagttatatgtcccacatcggataaaagagtaaacgttgaaca 25561923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 30359263 - 30359322
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||||||| ||| ||||||||||  |||||| |||||||||||||| ||| ||||    
T  30359263 ttgttgtgtacaagtgtgagttatatgtctcacatcggataaaagagtaaatgttgaaca 30359322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 34834868 - 34834927
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||||||| ||| |||||||||| ||||||  ||||||| |||||| ||||||||    
T  34834868 ttgttgtgtacaagtgtgagttatatgtcccacattggataaaatagtaaaggttaaaca 34834927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 1014019 - 1013978
Alignment:
Q  217 agttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    |||||||||||||||||| ||||||| |||||||||| ||||    
T  1014019 agttatatgttccacatcggataaaatagtaaaagttgaaca 1013978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 8794103 - 8794163
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaacat 259  Q
    ||||||||||||| ||| ||||||||||  |||||| ||||||||| |||| ||| |||||    
T  8794103 ttgttgtgtacaagtgtgagttatatgtctcacatcggataaaagaataaatgttgaacat 8794163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 9482768 - 9482711
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||||||| ||  |||||||||||||||||  |||||||||||||| ||| ||||    
T  9482768 ttgttgtgtacaagtg--agttatatgttccacatgggataaaagagtaaaggttgaaca 9482711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 30245069 - 30245128
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||||||| ||| |||||||||||||||||| |||||||||||||| ||| ||||    
T  30245069 ttgttgtgtacaagtgtgagttatatgttccacatcggataaaagagtaaaggttgaaca 30245128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 30245486 - 30245545
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||| ||| ||| |||||||||| |||||||||||||||||||||| ||| ||||    
T  30245486 ttgttgtgtgcaagtgtgagttatatgtcccacatcagataaaagagtaaaggttgaaca 30245545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 45433233 - 45433292
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||||||| ||| ||||||||| |||||||| |||||||||||||| ||| ||||    
T  45433233 ttgttgtgtacaagtgtgagttatatgatccacatcggataaaagagtaaaggttgaaca 45433292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 30244262 - 30244312
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaa 249  Q
    ||||||||||||| ||| |||||||||| ||||||| ||||||||||||||    
T  30244262 ttgttgtgtacaagtgtgagttatatgtcccacatcggataaaagagtaaa 30244312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 7517572 - 7517631
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||| ||| ||| |||||||||| ||||||| |||||||||||||| ||| ||||    
T  7517572 ttgttgtgtgcaagtgtgagttatatgtcccacatcggataaaagagtaaaggttgaaca 7517631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 34218200 - 34218141
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||||||||||| ||||||||||  |||||| ||||||| |||||| ||| ||||    
T  34218200 ttgttgtgtacaaatgtgagttatatgtctcacatcggataaaaaagtaaatgttgaaca 34218141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 45434628 - 45434687
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||||||| ||| |||||||||| ||||||| ||||||| |||||| ||| ||||    
T  45434628 ttgttgtgtacaagtgtaagttatatgtcccacatcggataaaaaagtaaaggttgaaca 45434687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 249
Target Start/End: Complemental strand, 40094559 - 40094510
Alignment:
Q  200 tgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaa 249  Q
    |||||||| ||| ||| |||||||||| | ||||||||||||||||||||    
T  40094559 tgttgtgtgcaagtgtgagttatatgtccaacatcagataaaagagtaaa 40094510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 3135627 - 3135568
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||||||| ||| |||||||||| |||| ||||||||||||||||||||| ||||    
T  3135627 ttgttgtgtacaagtgtgagttatatgtcccacctcagataaaagagtaaaagttgaaca 3135568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 29645068 - 29645009
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||| ||| ||| |||||||||| ||||||| |||||||||||||| ||||||||    
T  29645068 ttgttgtgtgcaagtgtaagttatatgtcccacatcggataaaagagtaaaggttaaaca 29645009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 37990805 - 37990746
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||||||| ||| |||||||||||||||||| ||||||| |||||| ||| ||||    
T  37990805 ttgttgtgtacaagtgtgagttatatgttccacatcggataaaatagtaaatgttgaaca 37990746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 43346957 - 43346898
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||||||| ||| |||||||||| ||||||||||||||| |||||| ||| ||||    
T  43346957 ttgttgtgtacaagtgtgagttatatgtcccacatcagataaaatagtaaaggttgaaca 43346898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 22304114 - 22304064
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaa 249  Q
    ||||||||||||| ||| |||||||||| ||||||||||||||| ||||||    
T  22304114 ttgttgtgtacaagtgtgagttatatgtcccacatcagataaaatagtaaa 22304064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 25755386 - 25755436
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaa 249  Q
    ||||||||||||| ||| ||||||||||  |||||||||||||||||||||    
T  25755386 ttgttgtgtacaagtgtgagttatatgtctcacatcagataaaagagtaaa 25755436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 15773184 - 15773244
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaacat 259  Q
    ||||||||| ||| ||| |||||||||| |||||||  ||||||||||||||||| |||||    
T  15773184 ttgttgtgtgcaagtgtgagttatatgtcccacatcgaataaaagagtaaaagttgaacat 15773244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 32463067 - 32463015
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaag 251  Q
    ||||||||||||| ||| |||||||||| ||||||| |||| |||||||||||    
T  32463067 ttgttgtgtacaagtgtgagttatatgtcccacatcggatagaagagtaaaag 32463015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 42342554 - 42342495
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||| ||| ||| |||||||||| ||||||| |||||||||||||| ||| ||||    
T  42342554 ttgttgtgtgcaagtgtgagttatatgtcccacatccgataaaagagtaaaggttcaaca 42342495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 35946515 - 35946573
Alignment:
Q  200 tgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    |||||||||||| ||| |||||||||| ||||||| ||||||| |||||| ||| ||||    
T  35946515 tgttgtgtacaagtgtgagttatatgtcccacatcggataaaacagtaaaggttgaaca 35946573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 52634668 - 52634718
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaa 249  Q
    ||||||||||||| ||| |||||||||| ||||||| ||||||| ||||||    
T  52634668 ttgttgtgtacaagtgtgagttatatgtcccacatcggataaaacagtaaa 52634718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 8327897 - 8327946
Alignment:
Q  200 tgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaa 249  Q
    |||||||| ||| ||| |||||||||| ||||||| ||||||||||||||    
T  8327897 tgttgtgtgcaagtgtgagttatatgtcccacatcggataaaagagtaaa 8327946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 45901705 - 45901750
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaaga 244  Q
    ||||||||||||| ||| |||||||||| ||||||| |||||||||    
T  45901705 ttgttgtgtacaagtgtgagttatatgtcccacatcggataaaaga 45901750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 258
Target Start/End: Complemental strand, 54017984 - 54017923
Alignment:
Q  197 tattgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||||| ||| ||| |||||||||| | ||||| |||||||||||||| ||| ||||    
T  54017984 tattgttgtgtgcaagtgtgagttatatgtcctacatcggataaaagagtaaaggttgaaca 54017923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 32462725 - 32462673
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaag 251  Q
    ||||||||||||| ||| |||||||||| |||||||  || ||||||||||||    
T  32462725 ttgttgtgtacaagtgtgagttatatgtcccacatcgaatgaaagagtaaaag 32462673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 258
Target Start/End: Complemental strand, 45395820 - 45395760
Alignment:
Q  198 attgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    |||||||||| ||| ||| |||||||| | |||||||  ||||||||||||| ||||||||    
T  45395820 attgttgtgtgcaagtgtaagttatatatcccacatcgaataaaagagtaaaggttaaaca 45395760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 15880255 - 15880314
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||||||| ||| |||||||||||||||||| |||||||||||||| ||| ||||    
T  15880255 ttgttgtgtacaagtgtgagttatatgttccacatcggataaaagagtaaaggttgaaca 15880314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 6421296 - 6421346
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaa 249  Q
    ||||||||||||| ||| |||||||||| ||||||| ||||||||||||||    
T  6421296 ttgttgtgtacaagtgtaagttatatgtcccacatcggataaaagagtaaa 6421346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 258
Target Start/End: Original strand, 40733512 - 40733568
Alignment:
Q  202 ttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    |||||||||| ||| |||||||||| ||||||||||||||| |||||| ||| ||||    
T  40733512 ttgtgtacaagtgtgagttatatgtcccacatcagataaaaaagtaaatgttgaaca 40733568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 258
Target Start/End: Original strand, 6421377 - 6421436
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    |||||||| |||| ||| |||||||||| ||||||| |||||||||||||| ||| ||||    
T  6421377 ttgttgtgcacaagtgtgagttatatgtcccacatcggataaaagagtaaaggttgaaca 6421436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 43443152 - 43443108
Alignment:
Q  195 tttattgttgtgtacaaatgtcagttatatgttccacatcagata 239  Q
    ||||||||||||| ||| ||| |||||||||| ||||||||||||    
T  43443152 tttattgttgtgtgcaagtgtaagttatatgtcccacatcagata 43443108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 258
Target Start/End: Complemental strand, 1272 - 1213
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaaca 258  Q
    ||||||||||||| ||| |||||||||| ||||||  |||||||||||||| ||| ||||    
T  1272 ttgttgtgtacaagtgtgagttatatgtcccacattggataaaagagtaaaggttgaaca 1213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 261
Target Start/End: Complemental strand, 3151 - 3089
Alignment:
Q  199 ttgttgtgtacaaatgtcagttatatgttccacatcagataaaagagtaaaagttaaacatga 261  Q
    ||||||||| ||  ||| |||||||||| ||||||| |||||||||||||| ||| |||||||    
T  3151 ttgttgtgtgcaggtgtgagttatatgtcccacatcggataaaagagtaaaggttgaacatga 3089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University