View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8269_high_10 (Length: 225)
Name: NF8269_high_10
Description: NF8269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8269_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 16)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 679620 - 679826
Alignment:
| Q |
1 |
tatgtgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaaccagcttttagcatgcagcaaaagatgccatcg |
100 |
Q |
| |
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||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
679620 |
tatgtgattctccaaaggagggagtaacttatactttctaacggaaggattccacaacaaataagaaccagcttttagcattcagcaaaagatgccatcg |
679719 |
T |
|
| Q |
101 |
caagagcacattacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgagg |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
679720 |
caagagcacattacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgagg |
679819 |
T |
|
| Q |
201 |
ggattgg |
207 |
Q |
| |
|
||||||| |
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|
| T |
679820 |
ggattgg |
679826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 747538 - 747744
Alignment:
| Q |
1 |
tatgtgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaaccagcttttagcatgcagcaaaagatgccatcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
747538 |
tatgtgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaatatgaaccagcttttagcatgcagcaaaagatgccatcg |
747637 |
T |
|
| Q |
101 |
caagagcacattacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgagg |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||| |
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| T |
747638 |
caagatcacattacgtccacaaagttacctcgaattgtaagagtattaggagggtaaagttgtgtatgtgtaacaacgatagaagtagataaaaccgagg |
747737 |
T |
|
| Q |
201 |
ggattgg |
207 |
Q |
| |
|
||||||| |
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|
| T |
747738 |
ggattgg |
747744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 11 - 207
Target Start/End: Original strand, 9595049 - 9595245
Alignment:
| Q |
11 |
tccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaaccagcttttagcatgcagcaaaagatgccatcgcaagagcaca |
110 |
Q |
| |
|
||||||||||| | |||| || | |||||||||||||| |||||||| | ||||||||||| || || | || ||||| ||||||||||||||||||| |
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| T |
9595049 |
tccaaaggaggcaataacttaaattttctaatggaagggttccacaaaacataagaaccaggcttgagaaaacaacaaaaaatgccatcgcaagagcaca |
9595148 |
T |
|
| Q |
111 |
ttacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattgg |
207 |
Q |
| |
|
||||||||| | ||| || | |||| ||| |||||||||||||||||||||| |||||||||| ||||||||| || |||| ||| ||||||| |
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| T |
9595149 |
atacgtccacgtatttagatccatttgtgagagtattaggagggtaaagttgtgtctgtgtaacaatggtagaagtagaaaaaactgagtggattgg |
9595245 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 9566320 - 9566432
Alignment:
| Q |
86 |
caaaagatgccatcgcaagagcacattacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaag |
185 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||| |||| | || |||| | | | |||| ||||||||||||||||| ||||||| ||| ||||||| |
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|
| T |
9566320 |
caaaagatgccatcgcaagagcacgttaagtccacatagttgcgtctaattctgatactattgggagggtaaagttgtgtctgtgtaaaaaccgtagaag |
9566419 |
T |
|
| Q |
186 |
ttgataaaatcga |
198 |
Q |
| |
|
| ||||||||||| |
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|
| T |
9566420 |
tagataaaatcga |
9566432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 35 - 115
Target Start/End: Complemental strand, 2635294 - 2635214
Alignment:
| Q |
35 |
tttctaatggaaggattccacaacaaataagaaccagcttttagcatgcagcaaaagatgccatcgcaagagcacattacg |
115 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||| |||| | || |||||||||||||||||||||| ||||| |
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|
| T |
2635294 |
tttctaatggaagggttccacagaaaataagaaccagctttgagcacaccgctaaagatgccatcgcaagagcacgttacg |
2635214 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 207
Target Start/End: Original strand, 9562507 - 9562579
Alignment:
| Q |
135 |
ttgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattgg |
207 |
Q |
| |
|
|||| ||||||||||||| |||||||||||| ||||||||| |||||||||| || |||| | |||||||||| |
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|
| T |
9562507 |
ttgtgagaatattaggagcgtaaagttgtgtctgtgtaacagcggtagaagtagaaaaaaccaaggggattgg |
9562579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 2474749 - 2474651
Alignment:
| Q |
11 |
tccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaaccagcttttagcatgcagcaaaagatgccatcgcaagagcaca |
110 |
Q |
| |
|
||||||||||| | |||| || | |||| ||||||||| |||||||| |||||||| ||| |||| ||| ||| ||||||||||||||| |||||||||| |
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|
| T |
2474749 |
tccaaaggaggcaataacttaaattttccaatggaagggttccacaa-aaataagagccatctttgagcgtgccgcaaaagatgccatcacaagagcaca |
2474651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 207
Target Start/End: Complemental strand, 2491726 - 2491527
Alignment:
| Q |
11 |
tccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaaccagcttttagcat---gcagcaaaagatgccatcgcaagagc |
107 |
Q |
| |
|
||||||||||| | |||| || |||||||||||||||| ||||||| ||| ||||| | | || |||| ||| |||||||||||||| ||| ||| |
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|
| T |
2491726 |
tccaaaggaggcaataacttaaactttctaatggaagggttccacagaaaaaaagaaacgccattaagcaccacgcaacaaaagatgccatcacaatagc |
2491627 |
T |
|
| Q |
108 |
acattacgtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattgg |
207 |
Q |
| |
|
|| |||| || ||| ||| || | |||| ||| || |||||||||||||||| || ||||||| |||||||||||| || |||| |||||| ||||| |
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|
| T |
2491626 |
accttaccaacataaatttatgtccatttgtgagattagtaggagggtaaagttgggtctgtgtaataacggtagaagtagaaaaaagcgagggtattgg |
2491527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 207
Target Start/End: Original strand, 2659539 - 2659746
Alignment:
| Q |
3 |
tgtgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaaccagcttttagcatgcagcaaaagatgccatcgca |
102 |
Q |
| |
|
|||||||| ||||||||| | |||| || |||||||||||||||| ||||| || |||||||||||| || ||| | | ||||| ||||||||||| |
|
|
| T |
2659539 |
tgtgattccgcaaaggaggcaataacttaaactttctaatggaagggttccataagaaataagaaccattattgagcttaccacaaaatatgccatcgca |
2659638 |
T |
|
| Q |
103 |
agagcacattac---gtccacaaagttacctcaaattgtaagaatattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgag |
199 |
Q |
| |
|
||||| ||| | ||| | ||| | || | |||| ||| |||||||| |||||||||||| |||||||||||||||||||| || ||||| || |
|
|
| T |
2659639 |
agagctcatcatcaggtcgatgcagtgatgtccatttgtgagagtattaggaatgtaaagttgtgtttgtgtaacaacggtagaagtagagaaaattgaa |
2659738 |
T |
|
| Q |
200 |
gggattgg |
207 |
Q |
| |
|
|||||||| |
|
|
| T |
2659739 |
gggattgg |
2659746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 2501814 - 2501751
Alignment:
| Q |
4 |
gtgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaa |
67 |
Q |
| |
|
|||||||||||||||||| | |||| || ||||| |||||||||| |||||||| ||||||||| |
|
|
| T |
2501814 |
gtgattctccaaaggaggcaataacttaaactttgtaatggaagggttccacaagaaataagaa |
2501751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 2476159 - 2476118
Alignment:
| Q |
145 |
attaggagggtaaagttgtgtatgtgtaacaacggtagaagt |
186 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
2476159 |
attaggagggtaaagttgtgtctgtgtaacaacggttgaagt |
2476118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 207
Target Start/End: Original strand, 755176 - 755239
Alignment:
| Q |
144 |
tattaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattgg |
207 |
Q |
| |
|
|||| ||||||||||||||||| ||||||| ||| |||||||| || ||||| || |||||||| |
|
|
| T |
755176 |
tattgggagggtaaagttgtgtctgtgtaaaaacagtagaagtagaaaaaatggatgggattgg |
755239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 207
Target Start/End: Complemental strand, 2630843 - 2630781
Alignment:
| Q |
145 |
attaggagggtaaagttgtgtatgtgtaacaacggtagaagttgataaaatcgaggggattgg |
207 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| ||| ||||| || |||| ||| |||||||| |
|
|
| T |
2630843 |
attaggagggtaaagttgtgtttgtgcaacaatggttgaagtagaaaaaagcgaagggattgg |
2630781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 2630971 - 2630909
Alignment:
| Q |
5 |
tgattctccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaa |
67 |
Q |
| |
|
||||| ||||| ||||| | |||| || |||||||||||||||| |||||||| ||||||||| |
|
|
| T |
2630971 |
tgattttccaatggaggcaataacttaaactttctaatggaagggttccacaagaaataagaa |
2630909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 7324862 - 7324932
Alignment:
| Q |
38 |
ctaatggaaggattccacaacaaataagaaccagcttttagcatgcagcaaaagatgccatcgcaagagca |
108 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| |||| ||||||| |||| |||||||| |||||||| |
|
|
| T |
7324862 |
ctaatggaagggttccacaaataataagaaccaactttgagcatgcccaaaaaaatgccatcacaagagca |
7324932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 2644763 - 2644819
Alignment:
| Q |
11 |
tccaaaggaggaagtaacgtatactttctaatggaaggattccacaacaaataagaa |
67 |
Q |
| |
|
||||||||||| | |||| || ||||||||| |||||| |||||||| ||||||||| |
|
|
| T |
2644763 |
tccaaaggaggcaataacttaaactttctaacggaagggttccacaagaaataagaa |
2644819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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