View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8269_low_1 (Length: 530)
Name: NF8269_low_1
Description: NF8269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8269_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 17 - 520
Target Start/End: Original strand, 12642216 - 12642717
Alignment:
| Q |
17 |
attactacttacatatgtgaatgcgcattaatttaaagagagtaacatcatgtagctatttataatctttaacacaccatccaataacgtatcattgcat |
116 |
Q |
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| T |
12642216 |
attactacttacatatgtgaatgcgcattaatttaaagagagtaacatcatgtagctatttataatctttaacacaccatccaataacgtatcattgcat |
12642315 |
T |
|
| Q |
117 |
caattgagacttctcagatttatttcttttgtatattcgttcacatactgattcatatgttccattatgttattccaattcatcaagttccattgtgtct |
216 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12642316 |
caattgagacttctcagatttatttcttatgtatattcgttcacatactgattcatatgttccattatgttattccaattcatcaagttccattgtgtct |
12642415 |
T |
|
| Q |
217 |
cttgcaattcctaaaacatagtgtatcggaagcttcttcaatgctttaacaccacaacttgcatcgtaacaaaaagcaaattaaacaattgaatgtgaac |
316 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12642416 |
cttgcaattcctagaacatagtgtatcggaagcttcttcaatgctttaacaccacaacttgcatcgtaacaaaaagcaaattaaacaattgaatgtgaac |
12642515 |
T |
|
| Q |
317 |
attttaattttctcattattctccctaaatttctctggcgcattaccatannnnnnncagcctcccgatgtgtttgatccatggtttcagattgtggctt |
416 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12642516 |
attttaa--ttctcattattctccctaaatttctctggcgcattaccatatttttttcagcctcccgatgtgtttgatccatggtttcagattgtggctt |
12642613 |
T |
|
| Q |
417 |
cggttatgttgcaaaccttcatattacggtgaaacctgagaaaatgccgctgaggtggtcgaatttgcaattgcgatgttgtcatagaaacttcaaaatc |
516 |
Q |
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||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
12642614 |
cggttatgttgcagaccttcatattactgtgaaacctgagaaaatgccgctgaggtgatcgaatttgcaattgcgatgttgtcatagaaacttcaaaatc |
12642713 |
T |
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| Q |
517 |
tctg |
520 |
Q |
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| T |
12642714 |
tctg |
12642717 |
T |
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