View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8269_low_10 (Length: 343)
Name: NF8269_low_10
Description: NF8269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8269_low_10 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 5352140 - 5351798
Alignment:
| Q |
1 |
agttggggctggcaagtcttctttgcttcatgctatccttggagaaatgcctaaagtttgtggaactgtgagtatgaaccnnnnnnntcactctctccat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5352140 |
agttggggctggcaagtcttctttgcttcatgctatccttggagaaatgcctaaagtttgtggaactgtgagtatgaaccaaaaaaatcactctctccat |
5352041 |
T |
|
| Q |
101 |
tcctttttaaccgtcgattttgtataaaagttgcgttacatttatttgttgatacatgtaaataaacttaaaacgacaactaaaaacgaacgagagagaa |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5352040 |
tcctttttaaccatcgattttgtataaaagttgtgttacatttatttgttgatacatgtaaataaacttaaaacgacaactaaaaacgaacgagagagaa |
5351941 |
T |
|
| Q |
201 |
taatgtcttgatgcagtacttttatttgattaattatatgtatcaacaatgttgttatcttaattataatgtcgctaaatgcagcttaatttgcatggtg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5351940 |
taatgtcttgatgcagtacttttatttgattaattatatgtatcaacaatgttgttatcttaattataatgtcgctaaatgcagcttaatttgcatggtg |
5351841 |
T |
|
| Q |
301 |
aggtagcctatgtttctcaaacatcatggatacaaagtggaac |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5351840 |
aggtagcctatgtttctcaaacatcatggatacaaagtggaac |
5351798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 343
Target Start/End: Complemental strand, 31526647 - 31526610
Alignment:
| Q |
306 |
gcctatgtttctcaaacatcatggatacaaagtggaac |
343 |
Q |
| |
|
||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
31526647 |
gcctatgtttctcaatcttcatggatacaaagtggaac |
31526610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University