View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8269_low_14 (Length: 262)

Name: NF8269_low_14
Description: NF8269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8269_low_14
NF8269_low_14
[»] chr4 (20 HSPs)
chr4 (19-244)||(12315688-12315913)
chr4 (27-175)||(12323307-12323459)
chr4 (187-244)||(52677553-52677610)
chr4 (186-229)||(10286410-10286453)
chr4 (186-244)||(4437680-4437738)
chr4 (186-244)||(9268023-9268081)
chr4 (186-228)||(9449715-9449757)
chr4 (186-228)||(9450952-9450994)
chr4 (186-244)||(17931288-17931346)
chr4 (186-244)||(17932153-17932211)
chr4 (187-229)||(45667232-45667274)
chr4 (188-229)||(12585451-12585492)
chr4 (186-243)||(49028542-49028599)
chr4 (188-244)||(53892253-53892309)
chr4 (186-229)||(10468773-10468816)
chr4 (186-229)||(28450750-28450793)
chr4 (186-229)||(28451569-28451612)
chr4 (186-221)||(45667370-45667405)
chr4 (186-244)||(3990953-3991011)
chr4 (189-227)||(25225793-25225831)
[»] chr5 (7 HSPs)
chr5 (186-244)||(34634068-34634126)
chr5 (186-229)||(23322391-23322434)
chr5 (186-243)||(43183230-43183287)
chr5 (186-229)||(9379930-9379973)
chr5 (186-229)||(15933620-15933663)
chr5 (186-243)||(5841156-5841213)
chr5 (186-243)||(42792948-42793005)
[»] chr3 (14 HSPs)
chr3 (186-244)||(31596765-31596823)
chr3 (186-244)||(38758885-38758943)
chr3 (186-229)||(3171779-3171822)
chr3 (186-229)||(11422379-11422422)
chr3 (186-244)||(3171489-3171547)
chr3 (186-228)||(16907930-16907972)
chr3 (186-244)||(18025880-18025938)
chr3 (186-244)||(24107151-24107209)
chr3 (186-244)||(27864799-27864857)
chr3 (186-244)||(27865076-27865134)
chr3 (186-229)||(46684098-46684141)
chr3 (186-244)||(24107429-24107487)
chr3 (186-244)||(46685543-46685601)
chr3 (189-221)||(54446317-54446349)
[»] chr2 (10 HSPs)
chr2 (186-232)||(4410665-4410711)
chr2 (186-228)||(14159206-14159248)
chr2 (186-228)||(14160450-14160492)
chr2 (186-243)||(38695167-38695224)
chr2 (186-229)||(4734245-4734288)
chr2 (186-229)||(18166633-18166676)
chr2 (186-229)||(42963061-42963104)
chr2 (186-244)||(4733304-4733362)
chr2 (186-244)||(18171358-18171416)
chr2 (186-226)||(42962768-42962808)
[»] scaffold0008 (1 HSPs)
scaffold0008 (189-229)||(266913-266953)
[»] chr6 (5 HSPs)
chr6 (186-229)||(8287458-8287501)
chr6 (186-244)||(3659229-3659287)
chr6 (186-229)||(5367708-5367750)
chr6 (186-229)||(8286788-8286831)
chr6 (186-218)||(13119207-13119239)
[»] chr1 (6 HSPs)
chr1 (186-229)||(14903806-14903849)
chr1 (186-244)||(9114819-9114877)
chr1 (186-244)||(14904609-14904667)
chr1 (186-227)||(17690966-17691007)
chr1 (188-221)||(17689738-17689771)
chr1 (188-221)||(37499178-37499211)
[»] chr8 (6 HSPs)
chr8 (186-244)||(10536000-10536058)
chr8 (187-229)||(32539478-32539520)
chr8 (186-229)||(10536820-10536863)
chr8 (187-219)||(18203359-18203391)
chr8 (187-227)||(30905397-30905437)
chr8 (188-244)||(30906004-30906060)
[»] scaffold0069 (1 HSPs)
scaffold0069 (188-229)||(19897-19938)
[»] chr7 (1 HSPs)
chr7 (186-229)||(4265269-4265312)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 12315688 - 12315913
Alignment:
Q  19 cattcacactataattgtggaactctacatgaagaggaaagtttaaattacatatgatttgaaataataatcttgtggcatataggtatgtaaaacctca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12315688 cattcacactataattgtggaactctacatgaagaggaaagtttaaattacatatgatttgaaataataatcttgtggcatataggtatgtaaaacctca 12315787  T
Q  119 ttatatgttatgcttgtatatgtattgtgctaagtgtgacattctgccataatgtgatannnnnnnnggcttaattaatgatttggtcctttaagttatt 218  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||        |||||||||||||||||||||||||||||||||    
T  12315788 ttatatgttatgcttgtatatgtattgtgctaagtgtgacatcctgccataatgtgatattttttttggcttaattaatgatttggtcctttaagttatt 12315887  T
Q  219 tgtaggttacaattctgtcccataag 244  Q
    ||||||||||||||  ||||||||||    
T  12315888 tgtaggttacaatttggtcccataag 12315913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 27 - 175
Target Start/End: Original strand, 12323307 - 12323459
Alignment:
Q  27 ctataattgtggaactctacatgaagaggaaagtttaaattacatatga--tttgaaataataatcttgtggcatataggt-atgtaaaacctcattata 123  Q
    |||||||||||||||||||||||||||||||| | ||||||||||||||  |||||||| ||||||||||| || |||||| ||||||||||||||||||    
T  12323307 ctataattgtggaactctacatgaagaggaaaatctaaattacatatgatttttgaaattataatcttgtgccacataggtaatgtaaaacctcattata 12323406  T
Q  124 tgttatgcttgtatatgta-ttgtgctaagtgtgacattctgccataatgtga 175  Q
    ||||||||||||||||||| || ||||||||||||||||||||| ||||||||    
T  12323407 tgttatgcttgtatatgtatttttgctaagtgtgacattctgccctaatgtga 12323459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 187 - 244
Target Start/End: Original strand, 52677553 - 52677610
Alignment:
Q  187 gcttaattaatgatttggtcctttaagttatttgtaggttacaattctgtcccataag 244  Q
    ||||||||||| ||||||||| ||||||||||||| ||||||||||  ||||||||||    
T  52677553 gcttaattaattatttggtcccttaagttatttgttggttacaatttggtcccataag 52677610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 10286410 - 10286453
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttaca 229  Q
    |||||||||||||||||||||| ||||||||||||| |||||||    
T  10286410 ggcttaattaatgatttggtcccttaagttatttgttggttaca 10286453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 4437680 - 4437738
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttacaattctgtcccataag 244  Q
    ||||||||||||| |||||||| |||| |||||||| ||||||||||  ||||||||||    
T  4437680 ggcttaattaatggtttggtccattaaattatttgttggttacaatttggtcccataag 4437738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 9268023 - 9268081
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttacaattctgtcccataag 244  Q
    |||||||||||||||||||||| ||||||||||| | ||||||| ||  ||||||||||    
T  9268023 ggcttaattaatgatttggtcccttaagttatttattggttacattttggtcccataag 9268081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 9449715 - 9449757
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttac 228  Q
    |||||||||||||||||||||| ||||||||||||| ||||||    
T  9449715 ggcttaattaatgatttggtccattaagttatttgttggttac 9449757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 9450994 - 9450952
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttac 228  Q
    |||||||||||||||||||||| ||||||||||||| ||||||    
T  9450994 ggcttaattaatgatttggtcccttaagttatttgttggttac 9450952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 17931288 - 17931346
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttacaattctgtcccataag 244  Q
    |||||||||||||| ||||||| ||||||||||| | ||||||||||  ||||||||||    
T  17931288 ggcttaattaatgaattggtcccttaagttatttattggttacaatttggtcccataag 17931346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 17932211 - 17932153
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttacaattctgtcccataag 244  Q
    |||||||||||||| ||||||| ||||||||||| | ||||||||||  ||||||||||    
T  17932211 ggcttaattaatgaattggtcccttaagttatttattggttacaatttggtcccataag 17932153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 45667232 - 45667274
Alignment:
Q  187 gcttaattaatgatttggtcctttaagttatttgtaggttaca 229  Q
    ||||||||||||||||||||| ||||||||||||| |||||||    
T  45667232 gcttaattaatgatttggtcccttaagttatttgttggttaca 45667274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 12585492 - 12585451
Alignment:
Q  188 cttaattaatgatttggtcctttaagttatttgtaggttaca 229  Q
    |||||||||||||||||||| ||||||||||||| |||||||    
T  12585492 cttaattaatgatttggtcccttaagttatttgttggttaca 12585451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 49028599 - 49028542
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttacaattctgtcccataa 243  Q
    |||||||||||||||||||||| ||||||||||| | ||||||| ||  |||||||||    
T  49028599 ggcttaattaatgatttggtcccttaagttatttattggttacattttggtcccataa 49028542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 53892253 - 53892309
Alignment:
Q  188 cttaattaatgatttggtcctttaagttatttgtaggttacaattctgtcccataag 244  Q
    ||||||||||||||||||   ||||||||||| ||||||||||||  ||||||||||    
T  53892253 cttaattaatgatttggtttcttaagttatttataggttacaattgggtcccataag 53892309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 10468816 - 10468773
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttaca 229  Q
    |||||||||||| ||||||||| ||||||||||||| |||||||    
T  10468816 ggcttaattaatcatttggtcccttaagttatttgttggttaca 10468773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 28450750 - 28450793
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttaca 229  Q
    |||||||||||||||||||||| |||| |||||||| |||||||    
T  28450750 ggcttaattaatgatttggtcccttaaattatttgttggttaca 28450793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 28451612 - 28451569
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttaca 229  Q
    ||||||||||||||||| |||| ||||||||||||| |||||||    
T  28451612 ggcttaattaatgatttagtcccttaagttatttgttggttaca 28451569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 45667405 - 45667370
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgt 221  Q
    ||||||||||||||| ||||||||||||||||||||    
T  45667405 ggcttaattaatgatgtggtcctttaagttatttgt 45667370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 3991011 - 3990953
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttacaattctgtcccataag 244  Q
    |||||||||| ||||||||||| |||||||| |||| ||||||| ||  ||||||||||    
T  3991011 ggcttaattattgatttggtcccttaagttaattgttggttacattttggtcccataag 3990953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 25225793 - 25225831
Alignment:
Q  189 ttaattaatgatttggtcctttaagttatttgtaggtta 227  Q
    ||||||||||||||||||| ||||||||||||| |||||    
T  25225793 ttaattaatgatttggtcccttaagttatttgttggtta 25225831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 34634068 - 34634126
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttacaattctgtcccataag 244  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||  ||||||||||    
T  34634068 ggcttaattaatgatgtggtcctttaagttatttgttggttacaatttggtcccataag 34634126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 23322434 - 23322391
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttaca 229  Q
    |||||||||||||||||||||| ||||||||||||| |||||||    
T  23322434 ggcttaattaatgatttggtcccttaagttatttgttggttaca 23322391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 43183230 - 43183287
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttacaattctgtcccataa 243  Q
    |||||||||||| ||||||||| ||||||||||||| ||||||| ||  |||||||||    
T  43183230 ggcttaattaataatttggtcccttaagttatttgttggttacattttggtcccataa 43183287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 9379930 - 9379973
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttaca 229  Q
    |||||||||||||| ||||||| ||||||||||||| |||||||    
T  9379930 ggcttaattaatgaattggtcccttaagttatttgttggttaca 9379973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 15933663 - 15933620
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttaca 229  Q
    ||||||||| |||||||||||| ||||||||||||| |||||||    
T  15933663 ggcttaattcatgatttggtcccttaagttatttgttggttaca 15933620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 5841213 - 5841156
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttacaattctgtcccataa 243  Q
    |||||||||||||||||||||  |||| |||||||| ||||||| ||  |||||||||    
T  5841213 ggcttaattaatgatttggtctcttaacttatttgttggttacattttggtcccataa 5841156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 243
Target Start/End: Original strand, 42792948 - 42793005
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttacaattctgtcccataa 243  Q
    |||||||||||||||||||||  ||||||||||||| |||| || ||  |||||||||    
T  42792948 ggcttaattaatgatttggtcgcttaagttatttgttggtttcattttggtcccataa 42793005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 31596823 - 31596765
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttacaattctgtcccataag 244  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| ||  ||||||||||    
T  31596823 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcccataag 31596765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 38758943 - 38758885
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttacaattctgtcccataag 244  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| ||  ||||||||||    
T  38758943 ggcttaattaatgatttggtcccttaagttatttgttggttacattttggtcccataag 38758885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 3171822 - 3171779
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttaca 229  Q
    |||||||||||||||||||||| ||||||||||||| |||||||    
T  3171822 ggcttaattaatgatttggtcccttaagttatttgtcggttaca 3171779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 11422379 - 11422422
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttaca 229  Q
    |||||||||||||||||||||| ||||||||||||| |||||||    
T  11422379 ggcttaattaatgatttggtcccttaagttatttgttggttaca 11422422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 3171489 - 3171547
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttacaattctgtcccataag 244  Q
    ||||||||||||||| |||||| ||||||||||||| ||||||| ||  ||||||||||    
T  3171489 ggcttaattaatgatgtggtcccttaagttatttgttggttacattttagtcccataag 3171547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 16907930 - 16907972
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttac 228  Q
    |||||||||||||||||||||| ||||||||||||| ||||||    
T  16907930 ggcttaattaatgatttggtcccttaagttatttgttggttac 16907972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 18025880 - 18025938
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttacaattctgtcccataag 244  Q
    ||||||||||||| |||||||| ||||||||||||| ||||||| ||  ||||||||||    
T  18025880 ggcttaattaatgctttggtcccttaagttatttgttggttacattttggtcccataag 18025938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 24107151 - 24107209
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttacaattctgtcccataag 244  Q
    |||||||||||||||||||||| || |||||||||| ||||||| ||  ||||||||||    
T  24107151 ggcttaattaatgatttggtcccttgagttatttgttggttacattttggtcccataag 24107209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 27864799 - 27864857
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttacaattctgtcccataag 244  Q
    ||||||||||||||||||||||  |||||||||||| ||||||| ||  ||||||||||    
T  27864799 ggcttaattaatgatttggtcccgtaagttatttgttggttacattttggtcccataag 27864857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 27865134 - 27865076
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttacaattctgtcccataag 244  Q
    ||||||||||||||| |||||| ||||||||||||| ||||||| ||  ||||||||||    
T  27865134 ggcttaattaatgatgtggtcccttaagttatttgttggttacattttagtcccataag 27865076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 46684098 - 46684141
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttaca 229  Q
    |||||||||||||||||||||  ||||||||||||| |||||||    
T  46684098 ggcttaattaatgatttggtcgcttaagttatttgttggttaca 46684141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 24107487 - 24107429
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttacaattctgtcccataag 244  Q
    ||||||||||||||| |||||| |||||||| |||| ||||||| ||  ||||||||||    
T  24107487 ggcttaattaatgatgtggtccattaagttaattgttggttacattttagtcccataag 24107429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 46685601 - 46685543
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttacaattctgtcccataag 244  Q
    |||||||||||||||||||||| |||| |||||| | ||||||| ||  ||||||||||    
T  46685601 ggcttaattaatgatttggtcccttaaattatttattggttacattttggtcccataag 46685543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 54446349 - 54446317
Alignment:
Q  189 ttaattaatgatttggtcctttaagttatttgt 221  Q
    ||||||||||||||||||| |||||||||||||    
T  54446349 ttaattaatgatttggtcccttaagttatttgt 54446317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 4410711 - 4410665
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttacaatt 232  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||    
T  4410711 ggcttaattaatgatttggtcccttaagttatttgttggttacaatt 4410665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 14159206 - 14159248
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttac 228  Q
    |||||||||||||||||||||| ||||||||||||| ||||||    
T  14159206 ggcttaattaatgatttggtcccttaagttatttgttggttac 14159248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 228
Target Start/End: Complemental strand, 14160492 - 14160450
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttac 228  Q
    |||||||||||||||||||||| ||||||||||||| ||||||    
T  14160492 ggcttaattaatgatttggtccattaagttatttgttggttac 14160450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 38695224 - 38695167
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttacaattctgtcccataa 243  Q
    |||||||||||||||||||||| ||||||||||| | ||||||| ||  |||||||||    
T  38695224 ggcttaattaatgatttggtcccttaagttatttattggttacattttggtcccataa 38695167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 4734288 - 4734245
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttaca 229  Q
    |||||||||||||| ||||||| ||||||||||||| |||||||    
T  4734288 ggcttaattaatgaattggtcccttaagttatttgttggttaca 4734245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 18166633 - 18166676
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttaca 229  Q
    |||||||||||||||||||||| |||| |||||||| |||||||    
T  18166633 ggcttaattaatgatttggtcccttaaattatttgttggttaca 18166676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 42963104 - 42963061
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttaca 229  Q
    ||||||||||||||| |||||| ||||||||||||| |||||||    
T  42963104 ggcttaattaatgatgtggtcccttaagttatttgttggttaca 42963061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 4733304 - 4733362
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttacaattctgtcccataag 244  Q
    |||||||||||||||||| ||| |||| |||||||| ||||||| ||  ||||||||||    
T  4733304 ggcttaattaatgatttgatcccttaaattatttgttggttacattttggtcccataag 4733362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 18171416 - 18171358
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttacaattctgtcccataag 244  Q
    ||||||||||||||| |||||| |||| |||||||| ||||||| ||  ||||||||||    
T  18171416 ggcttaattaatgatatggtcccttaaattatttgttggttacattttagtcccataag 18171358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 226
Target Start/End: Original strand, 42962768 - 42962808
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggtt 226  Q
    |||||||||||||||||||||| ||| ||||||||| ||||    
T  42962768 ggcttaattaatgatttggtcccttaggttatttgttggtt 42962808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 266953 - 266913
Alignment:
Q  189 ttaattaatgatttggtcctttaagttatttgtaggttaca 229  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  266953 ttaattaatgatttggtcctttaagttatttgttggttaca 266913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 8287501 - 8287458
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttaca 229  Q
    |||||||||||||||||||||| ||||||||||||| |||||||    
T  8287501 ggcttaattaatgatttggtcccttaagttatttgttggttaca 8287458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 3659287 - 3659229
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttacaattctgtcccataag 244  Q
    |||||||||||||||||||||| |||||||||||||  |||||| ||  ||||||||||    
T  3659287 ggcttaattaatgatttggtcccttaagttatttgttagttacattttggtcccataag 3659229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 5367750 - 5367708
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttaca 229  Q
    |||||||||||||||||||||| ||||||||||||| |||||||    
T  5367750 ggcttaattaatgatttggtcc-ttaagttatttgttggttaca 5367708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 8286788 - 8286831
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttaca 229  Q
    ||||||||||||||||| |||| ||||||||||||| |||||||    
T  8286788 ggcttaattaatgatttagtcccttaagttatttgttggttaca 8286831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 218
Target Start/End: Complemental strand, 13119239 - 13119207
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatt 218  Q
    |||||||||||||||||||||| ||||||||||    
T  13119239 ggcttaattaatgatttggtcccttaagttatt 13119207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 14903806 - 14903849
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttaca 229  Q
    |||||||||||||||||||||| ||||||||||||| |||||||    
T  14903806 ggcttaattaatgatttggtcccttaagttatttgttggttaca 14903849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 9114819 - 9114877
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttacaattctgtcccataag 244  Q
    ||||||||||||||||| |||| ||||||||||||| ||||||| ||  ||||||||||    
T  9114819 ggcttaattaatgattttgtcccttaagttatttgttggttacattttggtcccataag 9114877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 244
Target Start/End: Complemental strand, 14904667 - 14904609
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttacaattctgtcccataag 244  Q
    ||||||||||||||||| |||| ||||||||||||| ||||||| ||  ||||||||||    
T  14904667 ggcttaattaatgatttagtcccttaagttatttgttggttacattttggtcccataag 14904609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 17691007 - 17690966
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggtta 227  Q
    |||||||||||||||||||||| ||||||||||||| |||||    
T  17691007 ggcttaattaatgatttggtcccttaagttatttgttggtta 17690966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 17689738 - 17689771
Alignment:
Q  188 cttaattaatgatttggtcctttaagttatttgt 221  Q
    |||||||||||||||||||| |||||||||||||    
T  17689738 cttaattaatgatttggtcccttaagttatttgt 17689771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 37499178 - 37499211
Alignment:
Q  188 cttaattaatgatttggtcctttaagttatttgt 221  Q
    |||||||||||||||||||| |||||||||||||    
T  37499178 cttaattaatgatttggtcccttaagttatttgt 37499211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 244
Target Start/End: Original strand, 10536000 - 10536058
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttacaattctgtcccataag 244  Q
    ||||||||||||||||| |||| ||||||||||||| ||||||| ||  ||||||||||    
T  10536000 ggcttaattaatgatttagtcccttaagttatttgttggttacattttggtcccataag 10536058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 229
Target Start/End: Complemental strand, 32539520 - 32539478
Alignment:
Q  187 gcttaattaatgatttggtcctttaagttatttgtaggttaca 229  Q
    ||||||||||||||||||||| ||||||||||||| |||||||    
T  32539520 gcttaattaatgatttggtcccttaagttatttgttggttaca 32539478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 10536863 - 10536820
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttaca 229  Q
    |||||||||||||||||||||| |||| |||||||| |||||||    
T  10536863 ggcttaattaatgatttggtcccttaaattatttgttggttaca 10536820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 219
Target Start/End: Complemental strand, 18203391 - 18203359
Alignment:
Q  187 gcttaattaatgatttggtcctttaagttattt 219  Q
    ||||||||||||||||||||| |||||||||||    
T  18203391 gcttaattaatgatttggtcccttaagttattt 18203359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 30905397 - 30905437
Alignment:
Q  187 gcttaattaatgatttggtcctttaagttatttgtaggtta 227  Q
    ||||||||||||||||||||| |||| |||||||| |||||    
T  30905397 gcttaattaatgatttggtcccttaaattatttgttggtta 30905437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 30906060 - 30906004
Alignment:
Q  188 cttaattaatgatttggtcctttaagttatttgtaggttacaattctgtcccataag 244  Q
    ||||||||||||| |||||  ||||||||||||| ||||||| ||  ||||||||||    
T  30906060 cttaattaatgatgtggtctcttaagttatttgttggttacattttagtcccataag 30906004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 19897 - 19938
Alignment:
Q  188 cttaattaatgatttggtcctttaagttatttgtaggttaca 229  Q
    |||||||||||||||||||| ||||||||||||| |||||||    
T  19897 cttaattaatgatttggtcccttaagttatttgttggttaca 19938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 4265312 - 4265269
Alignment:
Q  186 ggcttaattaatgatttggtcctttaagttatttgtaggttaca 229  Q
    |||||||||||||||||||||| |||||||| |||| |||||||    
T  4265312 ggcttaattaatgatttggtcccttaagttagttgtcggttaca 4265269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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