View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8269_low_2 (Length: 466)
Name: NF8269_low_2
Description: NF8269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8269_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 14 - 450
Target Start/End: Complemental strand, 56469152 - 56468716
Alignment:
| Q |
14 |
atgaacaagctgagggcacatgactttggaaagccaggttcggggaaagggataagactggatgatttaaagatatcagaggaagagatggaaatgtatg |
113 |
Q |
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| T |
56469152 |
atgaacaagctgagggcacatgactttggaaagccgggttcggggaaagggataagactggatgatttaaagatatcagaggaagagatggaaatgtatg |
56469053 |
T |
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| Q |
114 |
ttgatatgcatcatattacaaacaagtcatcgtatacagttgtggaaacaatgtctctagctaaaactgcagttcttttccgtgagcttggcctcaggca |
213 |
Q |
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| T |
56469052 |
ttgatatgcatcatattaccaacaagtcatcgtatacagttgtggaaacaatgtctctagctaaaactgcagttcttttccgtgagcttggcctcaggca |
56468953 |
T |
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| Q |
214 |
tttgttggtggtgccaaagacatccggagtaagaaacaatatactattacaatcttgaataaacatatccatgtatttaagtatacattggctgactttg |
313 |
Q |
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| T |
56468952 |
tttgttggtggtgccaaagacatccggagtaagaaacaatatactattacaatcttgaataaacatatccatgcatttaagtatacattggctgactttg |
56468853 |
T |
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| Q |
314 |
caatcattaattacaattatccttgtttgttggctgggagtgagtattaactaacaattactaatatttgtggttgttatgcagagacctccaattgtgg |
413 |
Q |
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| T |
56468852 |
caatcattaattacaattatccttgtatgttggctgggagtgagtattaactaacaattactaatatttgtggttgttatgcagagacctccaattgtgg |
56468753 |
T |
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| Q |
414 |
gaatcttgacaaggcacgacttcatgtccgagcatat |
450 |
Q |
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| T |
56468752 |
ggatcttgacaaggcacgacttcatgtccgagcatat |
56468716 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 246
Target Start/End: Original strand, 155492 - 155640
Alignment:
| Q |
98 |
gagatggaaatgtatgttgatatgcatcatattacaaacaagtcatcgtatacagttgtggaaacaatgtctctagctaaaactgcagttcttttccgtg |
197 |
Q |
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| T |
155492 |
gagatggaaatgtatgttgatcttcatccaatcacaaatacttctccatatactgttgttgaaacaatgtctcttgcaaaagctgctcttctgtttcggg |
155591 |
T |
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| Q |
198 |
agcttggcctcaggcatttgttggtggtgccaaagacatccggagtaag |
246 |
Q |
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| T |
155592 |
agcttggactcaggcatttgctagttgtgcctaagaaaccaggagtaag |
155640 |
T |
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