View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8269_low_3 (Length: 461)
Name: NF8269_low_3
Description: NF8269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8269_low_3 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 41388424 - 41388082
Alignment:
| Q |
1 |
gctcatagctcttctcaacagcagaacttgtttttgaagtttcaagctcttgctcaaaatcaagggcaatataagacagcttttccttcacatctcttac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41388424 |
gctcatagctcttctcaacagcagaacttgtttttgaagtttcaagctcttgctcaaaatcaagggcaatataagacagcttttccttcacatctcttac |
41388325 |
T |
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| Q |
101 |
aatttcacgctcggctgtggtagtgaaagaataaccacgctcggtaaggattttcatcaaggcatcagtgaggtcacgccctgctaaatcaagacgaagg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41388324 |
aatttcacgctcggctgtggtagtgaaagaataaccacgctcggtaaggattttcatcaaggcatcagtgaggtcacgccctgctaaatcaagacgaagg |
41388225 |
T |
|
| Q |
201 |
atagcatgtggaagggcatatccttcgtagattggtacagtgtggctgacaccatctccagagtccagaacaatacctccacatattaatataaagtttt |
300 |
Q |
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| T |
41388224 |
atagcatgtggaagggcatatccttcgtagattggtacagtgtggctgacaccatctccagagtccagaacaatacctgcacatattaatataaagtttt |
41388125 |
T |
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| Q |
301 |
caatcagaatttaatcataaaatagccatagatattgaaccaa |
343 |
Q |
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| T |
41388124 |
caatcagaatttaatcataaaatagccatagatattgaaccaa |
41388082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 373 - 441
Target Start/End: Complemental strand, 41388043 - 41387976
Alignment:
| Q |
373 |
ccctgtgaacttaactagacttcttaactcacattcaatatctgctccatatatcccactagcaaactg |
441 |
Q |
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| T |
41388043 |
ccctgtgaacttaactagacttcttaactcacattcaatatctgctccatatat-ccactagcaaactg |
41387976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 2 - 278
Target Start/End: Complemental strand, 68459 - 68183
Alignment:
| Q |
2 |
ctcatagctcttctcaacagcagaacttgtttttgaagtttcaagctcttgctcaaaatcaagggcaatataagacagcttttccttcacatctcttaca |
101 |
Q |
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||||||||||||||||||||| || || || || || ||||| | |||||| ||| ||||||| ||||| || || || ||||||||||| ||||| || |
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| T |
68459 |
ctcatagctcttctcaacagctgagctcgtcttcgaggtttctaactcttgttcataatcaagagcaatgtaggatagtttttccttcacgtctctcacg |
68360 |
T |
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| Q |
102 |
atttcacgctcggctgtggtagtgaaagaataaccacgctcggtaaggattttcatcaaggcatcagtgaggtcacgccctgctaaatcaagacgaagga |
201 |
Q |
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| T |
68359 |
atttcacgctcggctgttgtggtgaaagagtatccacgctcggttaagattttcatgagggcgtctgtgagatcacgacctgcaagatccaaacgcagga |
68260 |
T |
|
| Q |
202 |
tagcatgtggaagggcatatccttcgtagattggtacagtgtggctgacaccatctccagagtccagaacaatacct |
278 |
Q |
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| T |
68259 |
ttgcgtgtggaagggcatatccttcatagataggaactgtgtggctgacaccatctccagaatcaagaacaatacct |
68183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 2 - 278
Target Start/End: Original strand, 59349 - 59625
Alignment:
| Q |
2 |
ctcatagctcttctcaacagcagaacttgtttttgaagtttcaagctcttgctcaaaatcaagggcaatataagacagcttttccttcacatctcttaca |
101 |
Q |
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||||||||||||||| || ||||| || || || || || || |||||||||||| | ||||||||||| |||| |||||||||||||| ||| || ||| |
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| T |
59349 |
ctcatagctcttctccactgcagagctggtcttggatgtctctagctcttgctcatagtcaagggcaatgtaagccagcttttccttcatatccctcaca |
59448 |
T |
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| Q |
102 |
atttcacgctcggctgtggtagtgaaagaataaccacgctcggtaaggattttcatcaaggcatcagtgaggtcacgccctgctaaatcaagacgaagga |
201 |
Q |
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||||||||||| |||| ||| || |||||||||||||| || || || |||||||||| | |||||| |||||||| || || |||||||||||||||| |
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| T |
59449 |
atttcacgctctgctgaggtggtaaaagaataaccacgttctgtcagaattttcatcatgtaatcagtcaggtcacgaccagccaaatcaagacgaagga |
59548 |
T |
|
| Q |
202 |
tagcatgtggaagggcatatccttcgtagattggtacagtgtggctgacaccatctccagagtccagaacaatacct |
278 |
Q |
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| T |
59549 |
tggcgtgtgggagggcataaccctcgtagatagggactgtgtggctgacaccatcaccagaatccaacacaatacct |
59625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 37050529 - 37050806
Alignment:
| Q |
1 |
gctcatagctcttctcaacagcagaacttgtttttgaagtttcaagctcttgctcaaaatcaagggcaatataagacagcttttccttcacatctcttac |
100 |
Q |
| |
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|||||||| ||||||||||||| || || ||||| | |||||| | ||| ||||| ||||||| |||||||||| || || ||||||| ||| ||||| |
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| T |
37050529 |
gctcataggtcttctcaacagctgagctagttttagcagtttccaactcctgctcgtaatcaagagcaatataagccaatttctccttcatatcccttac |
37050628 |
T |
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| Q |
101 |
aatttcacgctcggctgtggtagtgaaagaataaccacgctcggtaaggattttcatcaaggcatcagtgaggtcacgccctgctaaatcaagacgaagg |
200 |
Q |
| |
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|||||| ||||| |||| || ||||||| || ||||||||||| | || |||||||| ||||||||||| ||||| ||||| | ||| | ||||||| |
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| T |
37050629 |
aatttctcgctctgctgaagtggtgaaagtgtagccacgctcggttaaaatcttcatcaatgcatcagtgagatcacgacctgcaagatccaaacgaagg |
37050728 |
T |
|
| Q |
201 |
atagcatgtggaagggcatatccttcgtagattggtacagtgtggctgacaccatctccagagtccagaacaatacct |
278 |
Q |
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|| ||||||||||| |||||||| ||||| || || || |||||||| |||||||| ||||| ||||||||||||||| |
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| T |
37050729 |
attgcatgtggaagtgcatatccctcgtaaataggaaccgtgtggctaacaccatccccagaatccagaacaatacct |
37050806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 45 - 278
Target Start/End: Complemental strand, 8689801 - 8689568
Alignment:
| Q |
45 |
agctcttgctcaaaatcaagggcaatataagacagcttttccttcacatctcttacaatttcacgctcggctgtggtagtgaaagaataaccacgctcgg |
144 |
Q |
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|||||||||||| | ||||||||||| || || |||||||| ||||| || | |||||||| ||||| |||| ||| || |||||||||||||| || | |
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| T |
8689801 |
agctcttgctcatagtcaagggcaatgtatgaaagcttttctttcacgtcacgaacaatttctcgctctgctgaggtggtaaaagaataaccacgttcag |
8689702 |
T |
|
| Q |
145 |
taaggattttcatcaaggcatcagtgaggtcacgccctgctaaatcaagacgaaggatagcatgtggaagggcatatccttcgtagattggtacagtgtg |
244 |
Q |
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| | || ||||||||| ||| || |||||||| || || | ||||||||||||||| ||||||||||||||||| || |||||||| || |||||||| |
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| T |
8689701 |
tcaaaatcttcatcaagaaatcggtaaggtcacgaccagccagatcaagacgaaggatggcatgtggaagggcataaccctcgtagatggggacagtgtg |
8689602 |
T |
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| Q |
245 |
gctgacaccatctccagagtccagaacaatacct |
278 |
Q |
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|||||||||||| ||||| |||| ||||||||| |
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| T |
8689601 |
gctgacaccatcaccagaatccaacacaatacct |
8689568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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