View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8269_low_5 (Length: 396)
Name: NF8269_low_5
Description: NF8269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8269_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 17 - 379
Target Start/End: Original strand, 34675883 - 34676245
Alignment:
| Q |
17 |
agacatacccaacaaacatgtcacaacaaacttatttgacttactttacatcatatcatacctcaaaaaataattccttaatttcatcataatgtattag |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
34675883 |
agacatacccaacaaacatgtcacaacaaacttatttgacttactttacatcatatcatacctcaaaaaataattccttaatttcattataatgtattag |
34675982 |
T |
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| Q |
117 |
ctaattaagcaaaaaattctttgcttttcataattcattacctcccttctcccacacttaaccaactaactaactaacaccaccactatacc----tact |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
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| T |
34675983 |
ctaattaagcaaaaaattctttgcttttcataattcattacctcccttctcccacacttaaccaactaactaac----accaccactatacctacctact |
34676078 |
T |
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| Q |
213 |
ttgttaccatatctactcttgtccttacactttaagaaaagtaacacttttttatgtacatgattataaattttgatcaatttcatgagccacaacaact |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34676079 |
ttgttaccatatctactcttgtccttacactttaagaaaagtaacacttttttatgtacatgattataaattttgatcaatttcatgagccacaacaact |
34676178 |
T |
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| Q |
313 |
aaaagtaggtaatatagacttactcctaagtagttaaaggcttgcttagtcaccccctcctttaact |
379 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34676179 |
aaaagtaggtaatatagacttactcctaagtagttaaaggcttgcttagtcaccccctcctttaact |
34676245 |
T |
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