View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8269_low_7 (Length: 368)
Name: NF8269_low_7
Description: NF8269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8269_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 23 - 331
Target Start/End: Complemental strand, 16231234 - 16230926
Alignment:
| Q |
23 |
attatttttctatatatggaatgactagtgctattaacaatctttactttaaattctttactgttgattgaaattcatgtgagactttatattcaaaatg |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16231234 |
attatttttctatatatggaatgactagtgctattaacaatctttaatttaaattctttactgttgattgaaattcatgtgagactttatattcaaaatg |
16231135 |
T |
|
| Q |
123 |
attgaacttacataagcctttagagggaactgtttcagtcctgaaaatctgtccaaatgtatcaacctcctcatgattgtttatttcacttaacggtggt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| |
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| T |
16231134 |
attgaacttacataagcctttagagggaactgtttcagtcgtgaaaatctgtccaaatgtatcaacctccacatgattgttcatttcacttaactgtggt |
16231035 |
T |
|
| Q |
223 |
atttgaggattcaatttgcttctctagatcgtcttttggctcaacgaattcctttttagcatttatcccctcctgctggttgaacccagttctgcctcgt |
322 |
Q |
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|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16231034 |
atttgaggattcgatttgcttctcttgatcgtcttttggctcaacgaattcctttttagcatttatcccctcctgctggttgaacccagttctgcctcgt |
16230935 |
T |
|
| Q |
323 |
atgtcaact |
331 |
Q |
| |
|
||||||||| |
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| T |
16230934 |
atgtcaact |
16230926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 39 - 329
Target Start/End: Complemental strand, 34688961 - 34688689
Alignment:
| Q |
39 |
tggaatgactagtgctattaacaatctttactttaaattctttactgttgattgaaattcatgtgagactttatattcaaaatgattgaacttacataag |
138 |
Q |
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| T |
34688961 |
tggaatgactagtgctattaacaatcgttactttaaattctttactattgactgaaattcatgtgagtctttatattcaaaatgatt------------- |
34688875 |
T |
|
| Q |
139 |
cctttagagggaactgtttcagtcctgaaaatctgtccaaatgtatcaacctcctcatgattgtttatttcacttaacggtggtatttgaggattcaatt |
238 |
Q |
| |
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|| |||||||||||||| |||||||| ||||||||||||||||||||||| ||| |||||| || ||||| || |||||||||||||| || ||| |
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| T |
34688874 |
----tacagggaactgtttcaatcctgaaagtctgtccaaatgtatcaacctccacattattgttcatctcact-aattgtggtatttgaggactcgatt |
34688780 |
T |
|
| Q |
239 |
tgcttctctagatcgtcttttggctcaacgaattcctttttagcatttatcccctcctgctggttgaacccagttctgcctcgtatgtcaa |
329 |
Q |
| |
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||||||||| |||| |||||||||||||| | ||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
34688779 |
tgcttctcttgatcatcttttggctcaacaagttcctgtttagcatttatcccctcctgttggttgaatccagttctgcctcgtatgtcaa |
34688689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 39 - 329
Target Start/End: Complemental strand, 34711373 - 34711101
Alignment:
| Q |
39 |
tggaatgactagtgctattaacaatctttactttaaattctttactgttgattgaaattcatgtgagactttatattcaaaatgattgaacttacataag |
138 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||| |
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| T |
34711373 |
tggaatgactagtgctattaacaatcgttactttaaattctttactattgactgaaattcatgtgagtctttatattcaaaatgatt------------- |
34711287 |
T |
|
| Q |
139 |
cctttagagggaactgtttcagtcctgaaaatctgtccaaatgtatcaacctcctcatgattgtttatttcacttaacggtggtatttgaggattcaatt |
238 |
Q |
| |
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|| |||||||||||||| |||||||| ||||||||||||||||||||||| ||| |||||| || ||||| || |||||||||||||| || ||| |
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| T |
34711286 |
----tacagggaactgtttcaatcctgaaagtctgtccaaatgtatcaacctccacattattgttcatctcact-aattgtggtatttgaggactcgatt |
34711192 |
T |
|
| Q |
239 |
tgcttctctagatcgtcttttggctcaacgaattcctttttagcatttatcccctcctgctggttgaacccagttctgcctcgtatgtcaa |
329 |
Q |
| |
|
||||||||| |||| |||||||||||||| | ||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
34711191 |
tgcttctcttgatcatcttttggctcaacaagttcctgtttagcatttatcccctcctgttggttgaatccagttctgcctcgtatgtcaa |
34711101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 135 - 276
Target Start/End: Original strand, 35546645 - 35546785
Alignment:
| Q |
135 |
taagcctttagagggaactgtttcagtcctgaaaatctgtccaaatgtatcaacctcctcatgattgtttatttcacttaacggtggtatttgaggattc |
234 |
Q |
| |
|
|||||||||||||| || ||||| |||| |||| ||||||||||| |||||||| || ||| |||||||| ||| |||| || |||||| |||| || |
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| T |
35546645 |
taagcctttagaggcaaatgttttagtctagaaagtctgtccaaatctatcaaccgccacattgttgtttatctca-ttaattgtcgtatttaaggactc |
35546743 |
T |
|
| Q |
235 |
aatttgcttctctagatcgtcttttggctcaacgaattcctt |
276 |
Q |
| |
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|||| ||||||| |||| ||||| |||||||| |||||||| |
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| T |
35546744 |
gattttcttctcttgatcatctttgggctcaacaaattcctt |
35546785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 35925285 - 35925343
Alignment:
| Q |
51 |
tgctattaacaatctttactttaaattctttactgttgattgaaattcatgtgagactt |
109 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||| |||| |||||||| |||||||||| |
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| T |
35925285 |
tgctattaacaatctttattttgaattctttactattgactgaaattcttgtgagactt |
35925343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 290
Target Start/End: Original strand, 35564752 - 35564801
Alignment:
| Q |
241 |
cttctctagatcgtcttttggctcaacgaattcctttttagcatttatcc |
290 |
Q |
| |
|
||||||| |||| |||||||||||||| |||| ||| ||||||||||||| |
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| T |
35564752 |
cttctcttgatcatcttttggctcaacaaattgcttcttagcatttatcc |
35564801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 34689833 - 34689781
Alignment:
| Q |
45 |
gactagtgctattaacaatctttactttaaattctttactgttgattgaaatt |
97 |
Q |
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|
|||||||||||||||||||||| |||||| | | |||||| |||| ||||||| |
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| T |
34689833 |
gactagtgctattaacaatcttaactttagactttttactattgactgaaatt |
34689781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 97
Target Start/End: Complemental strand, 34712245 - 34712193
Alignment:
| Q |
45 |
gactagtgctattaacaatctttactttaaattctttactgttgattgaaatt |
97 |
Q |
| |
|
|||||||||||||||||||||| |||||| | | |||||| |||| ||||||| |
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| T |
34712245 |
gactagtgctattaacaatcttaactttagactttttactattgactgaaatt |
34712193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 135 - 293
Target Start/End: Complemental strand, 4384237 - 4384080
Alignment:
| Q |
135 |
taagcctttagagggaactgtttcagtcctgaaaatctgtccaaatgtatcaacctcctcatgattgtttatttcacttaacggtggtatttgaggattc |
234 |
Q |
| |
|
|||||||||||| |||| ||||||||||||| || ||||||||||| ||| |||| | ||| |||||||| ||| ||| | |||| |||||| || || |
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| T |
4384237 |
taagcctttagacggaaatgtttcagtcctggaagtctgtccaaatatattaaccgacacattgttgtttatctca-ttagctgtggcatttgaagactc |
4384139 |
T |
|
| Q |
235 |
aatttgcttctctagatcgtcttttggctcaacgaattcctttttagcatttatcccct |
293 |
Q |
| |
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||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
4384138 |
tgtttgcttctcttgatcatcttttggctcaacgaattcctttttagcatctatcccct |
4384080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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