View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8269_low_8 (Length: 368)
Name: NF8269_low_8
Description: NF8269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8269_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 17 - 353
Target Start/End: Complemental strand, 36912275 - 36911940
Alignment:
| Q |
17 |
attattctcatatagtcatgtgacactctttattttacggagaatcggagattgtgatctacgttgttctaggctctttaagaaataatgacgttcttta |
116 |
Q |
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| T |
36912275 |
attattctcatatagtcatgtgacactctttattttacggagaatcggagattgtgatctatgttgttctaggctctttaagaaataatgacgttcttta |
36912176 |
T |
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| Q |
117 |
tcttttaacaaagagaaacacaaattgttctttatctaatgtaatcaacaatggaattaaattatcatgagatagacaccgtttcggagaataatttgtc |
216 |
Q |
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| T |
36912175 |
tcttttaacaaagagaaacacaaattgttctttatctaatgtaatcaacaatggaattaaattatcatgagatagacaccgtttcggagaataatttgtc |
36912076 |
T |
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| Q |
217 |
aaaatcagttcaatgatagatactgtttcggagaataacaaatctaattttgtaagggactaaattggnnnnnnnnnnnnngttaaaagaatatttggac |
316 |
Q |
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| T |
36912075 |
aaaatcagttcaatgatagaaactgtttcggagaataacaagtctaattctgtaagggactaaattgg-ttttttttttttgttaaaagaatatttggac |
36911977 |
T |
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| Q |
317 |
ctgcccgttttgtcggaaataaaaataggtatttact |
353 |
Q |
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| T |
36911976 |
ctgcccgttttgtcggaaataaaaataggtatttact |
36911940 |
T |
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