View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8269_low_9 (Length: 362)
Name: NF8269_low_9
Description: NF8269
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8269_low_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 4174763 - 4174418
Alignment:
| Q |
1 |
tcctgtttctcctaccaaagtgtattggtttgtcaccttcaatagttcatctccaggttcttacttctaactacatgcatatacagttaaattacttagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4174763 |
tcctgtttctcctaccaaagtgtattggtttgtcaccttcaatagttcatctccaggttcttacttctaactacatgcatatacagttaaattacttagt |
4174664 |
T |
|
| Q |
101 |
ttattgttcaaatgaaaaatagttgagttcaatggtaggtcctaaaacaaccgagccatcggtgctaaagaagcaagctaaggatctagtagaaaactgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4174663 |
ttattgttcaaatgaaaaatagttgagttcaatggtaggtcctaaaacaaccgagccatcggtgctaaagaagcaagctaaggatcttgtagaaaactgg |
4174564 |
T |
|
| Q |
201 |
cctccagagctactaaacataatggattctacgccggatgagactatagtcttgactccgttgatggatcgatggctttggccatggataagtccacctg |
300 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4174563 |
cttccagagctactaaacataatggattctacgccggatgacactatagtcttgactccgttgatggatcgatggctttggccatggataagtccacctg |
4174464 |
T |
|
| Q |
301 |
tttctagaggtagagttgtactcgttggagacgcttggcacccaat |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4174463 |
tttctagaggtagagttgtactcgttggagacgcttggcacccaat |
4174418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 346
Target Start/End: Complemental strand, 4170768 - 4170420
Alignment:
| Q |
1 |
tcctgtttctcctaccaaagtgtattggtttgtcaccttcaatagttcatctccaggttcttacttctaactaca---tgcatatacagttaaattactt |
97 |
Q |
| |
|
|||||||||||| |||||||| ||||||||| || |||||| |||||||||||||||| |||||| | |||| | ||| || |||||||||| |
|
|
| T |
4170768 |
tcctgtttctccaaccaaagtctattggtttatctgcttcaacagttcatctccaggttgttacttgttactaataagtccatgtatgattaaattactg |
4170669 |
T |
|
| Q |
98 |
agtttattgttcaaatgaaaaatagttgagttcaatggtaggtcctaaaacaaccgagccatcggtgctaaagaagcaagctaaggatctagtagaaaac |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4170668 |
agtttattgttcaaatgaaaaatagttgagttcaatggcaggtcctaaaacaactgagccatcggtgctaaagaagcaagctaaggatctagtggaaaac |
4170569 |
T |
|
| Q |
198 |
tggcctccagagctactaaacataatggattctacgccggatgagactatagtcttgactccgttgatggatcgatggctttggccatggataagtccac |
297 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||| |||||| || |||||||||| ||||||||||||||||||||| | |||||||| |
|
|
| T |
4170568 |
tggcctccagagctactaaacataatggattctacaccggatgacactataatcaggactccgttggtggatcgatggctttggccatcaacaagtccac |
4170469 |
T |
|
| Q |
298 |
ctgtttctagaggtagagttgtactcgttggagacgcttggcacccaat |
346 |
Q |
| |
|
|||||||| ||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
4170468 |
ctgtttctgcaggtagagttgtactcgttggtgatgcttggcacccaat |
4170420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University