View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8270_high_1 (Length: 631)
Name: NF8270_high_1
Description: NF8270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8270_high_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 605; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 605; E-Value: 0
Query Start/End: Original strand, 19 - 631
Target Start/End: Original strand, 52034382 - 52034994
Alignment:
| Q |
19 |
agtatgtctcaagctatttcctttttatctgatttcaagttaggacattacatgaagatcccaccaaggtcaatgttcatagttcaggtatattgtctca |
118 |
Q |
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| T |
52034382 |
agtatgtctcaagctatttcctttttatctgatttcaagttaggacattacatgaagatcccaccaaggtcaatgttcatagttcaggtatattgtctca |
52034481 |
T |
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| Q |
119 |
ggctatttcctttcatagttattctaaatggtgaatgctaatgatgctcgtaaaattgatgccacagattttaggtactcttatagctggaacagtggat |
218 |
Q |
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| T |
52034482 |
ggctatttcctttcatagttattttaaatggtgaatactaatgatgctcgtaaaattgatgccacagattttaggtactcttatagctggaacagtggat |
52034581 |
T |
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| Q |
219 |
gttggtgtggcatggtggttgctaggttcaataaagaacatatgccatgaagatcaacttcccaaaggtagtccatggacatgcccaaatgacaacgtgt |
318 |
Q |
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| T |
52034582 |
gttggtgtggcatggtggttgctaggttcaataaagaacatatgccatgaagatcaacttcccaaaggtagtccatggacatgcccaaatgacaacgtgt |
52034681 |
T |
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| Q |
319 |
tctttgatgcctccgttatatggggtttggtgggaccaagaagaatttttgggccactaggaaactacgaaaagctgaactgggccttcctaattggact |
418 |
Q |
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| T |
52034682 |
tctttgatgcctccgttatatggggtttggtgggaccaagaagaatttttgggccactaggaaactacgaaaagctgaactgggccttcctaattggact |
52034781 |
T |
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| Q |
419 |
actgagcccaataatcatatgggccctaataaaagcctttcccagtcaaaaatggatatcatacattcacattcctgttctgcttggtgcaactgcaagt |
518 |
Q |
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| T |
52034782 |
actgagcccaataatcatatgggccctaataaaagcctttcccagtcaaaaatggatatcatacattcacattcctgttctgcttggtgcaactgcaagt |
52034881 |
T |
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| Q |
519 |
atgccaccagctagcacagtgaatttcaattcatggattactgttgcagttatatttaactattttatccacaaatatcgtaagaagtggtgggagagat |
618 |
Q |
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| T |
52034882 |
atgccaccagctagcacagtgaatttcaattcatggattactgttgcagttatatttaactattttatccacaaatatcgtaagaagtggtgggagagat |
52034981 |
T |
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| Q |
619 |
acaattatattct |
631 |
Q |
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| T |
52034982 |
acaattatattct |
52034994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 220 - 301
Target Start/End: Original strand, 36902890 - 36902971
Alignment:
| Q |
220 |
ttggtgtggcatggtggttgctaggttcaataaagaacatatgccatgaagatcaacttcccaaaggtagtccatggacatg |
301 |
Q |
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| T |
36902890 |
ttggtgtagcatggtggttgctagactcagtcaaaaacatatgtaataaagatcttcttcccaaaggcagtccatggacatg |
36902971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 2171172 - 2171112
Alignment:
| Q |
48 |
tgatttcaagttaggacattacatgaagatcccaccaaggtcaatgttcatagttcaggta |
108 |
Q |
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| T |
2171172 |
tgatttcaagcttggacactacatgaaaatccctccaagatcaatgttcttagttcaggta |
2171112 |
T |
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