View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8270_high_2 (Length: 536)

Name: NF8270_high_2
Description: NF8270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8270_high_2
NF8270_high_2
[»] chr8 (2 HSPs)
chr8 (1-519)||(295050-295573)
chr8 (491-519)||(26871046-26871074)
[»] chr3 (3 HSPs)
chr3 (481-520)||(22153854-22153893)
chr3 (490-519)||(52727491-52727520)
chr3 (488-520)||(43900799-43900831)
[»] chr5 (1 HSPs)
chr5 (490-520)||(27340868-27340898)
[»] chr4 (3 HSPs)
chr4 (490-520)||(17363229-17363259)
chr4 (490-519)||(51296232-51296261)
chr4 (491-519)||(29384240-29384268)
[»] chr2 (3 HSPs)
chr2 (490-520)||(42665854-42665884)
chr2 (482-519)||(41353540-41353577)
chr2 (490-518)||(42251964-42251992)
[»] chr6 (1 HSPs)
chr6 (490-519)||(16337113-16337142)
[»] chr1 (2 HSPs)
chr1 (488-517)||(586896-586925)
chr1 (491-519)||(37690429-37690457)


Alignment Details
Target: chr8 (Bit Score: 480; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 1 - 519
Target Start/End: Original strand, 295050 - 295573
Alignment:
Q  1 tgaagtagtcctgatcgaaggaaagaaggaatgtggcccccaccaacctccaacaaaccactggtgacattattatcaaaaaatgcattacactttgtag 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  295050 tgaagtagtcctgatcgaaggaaagaaggaatgtggtccccaccaacctccaacaaaccactggtgacattattatcaaaaaatgcattacactttgtag 295149  T
Q  101 tgttggtattgacacggtttgtgttagttaagaaagaaacatttgtaggttttaagggacagaagaaacagattgttgatgttcgatgcttaagtatagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  295150 tgttggtattgacacggtttgtgttagttaagaaagaaacatttgtaggttttaagggacagaagaaacagattgttgatgttcgatgcttaagtatagt 295249  T
Q  201 ggtaacagttggagttggatggagcaaagaagccatattgttatg-----atatgatatgatgctcattcattcattcgttccaagttcaaactacaatt 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  295250 ggtaacagttggagttggatggagcaaagaagccatattgttatgatatgatatgatatgatgctcattcattcattcgttccaagttcaaactacaatt 295349  T
Q  296 aacatagtaacatcatcataggcacctctcttgccacgtcttcctgttttattttatctctctttgcttggtccaaaattaaggcatcaaccttagccag 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  295350 aacatagtaacatcatcataggcacctctcttgccacgtcttcctgttttattttatctctctttgcttggtccaaaattaaggcatcaaccttagccag 295449  T
Q  396 atatatacatacatacttgcatcgtacatatttttccctccttatacttggatgaataaatattaggctaaattaaatcagggtcttttgaaagagagaa 495  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  295450 atataaacatacatacttgcatcgtacatattttcccctccttatacttggatgaataaatattaggctaaattaaatcagggtcttttaaaagtgagaa 295549  T
Q  496 atgatatttgtacaatcactttat 519  Q
    ||||||||||||||| ||||||||    
T  295550 atgatatttgtacaaccactttat 295573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 491 - 519
Target Start/End: Original strand, 26871046 - 26871074
Alignment:
Q  491 gagaaatgatatttgtacaatcactttat 519  Q
    |||||||||||||||||||||||||||||    
T  26871046 gagaaatgatatttgtacaatcactttat 26871074  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 520
Target Start/End: Original strand, 22153854 - 22153893
Alignment:
Q  481 ttttgaaagagagaaatgatatttgtacaatcactttatt 520  Q
    ||||||||  ||||||||||||||||||||||||||||||    
T  22153854 ttttgaaattgagaaatgatatttgtacaatcactttatt 22153893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 519
Target Start/End: Complemental strand, 52727520 - 52727491
Alignment:
Q  490 agagaaatgatatttgtacaatcactttat 519  Q
    ||||||||||||||||||||||||||||||    
T  52727520 agagaaatgatatttgtacaatcactttat 52727491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 488 - 520
Target Start/End: Complemental strand, 43900831 - 43900799
Alignment:
Q  488 agagagaaatgatatttgtacaatcactttatt 520  Q
    ||||||||||||||||||||||| |||||||||    
T  43900831 agagagaaatgatatttgtacaaccactttatt 43900799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 520
Target Start/End: Original strand, 27340868 - 27340898
Alignment:
Q  490 agagaaatgatatttgtacaatcactttatt 520  Q
    |||||||||||||||||||||||||||||||    
T  27340868 agagaaatgatatttgtacaatcactttatt 27340898  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 520
Target Start/End: Original strand, 17363229 - 17363259
Alignment:
Q  490 agagaaatgatatttgtacaatcactttatt 520  Q
    |||||||||||||||||||||||||||||||    
T  17363229 agagaaatgatatttgtacaatcactttatt 17363259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 519
Target Start/End: Complemental strand, 51296261 - 51296232
Alignment:
Q  490 agagaaatgatatttgtacaatcactttat 519  Q
    ||||||||||||||||||||||||||||||    
T  51296261 agagaaatgatatttgtacaatcactttat 51296232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 491 - 519
Target Start/End: Complemental strand, 29384268 - 29384240
Alignment:
Q  491 gagaaatgatatttgtacaatcactttat 519  Q
    |||||||||||||||||||||||||||||    
T  29384268 gagaaatgatatttgtacaatcactttat 29384240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 520
Target Start/End: Complemental strand, 42665884 - 42665854
Alignment:
Q  490 agagaaatgatatttgtacaatcactttatt 520  Q
    |||||||||||||||||||||||||||||||    
T  42665884 agagaaatgatatttgtacaatcactttatt 42665854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 519
Target Start/End: Complemental strand, 41353577 - 41353540
Alignment:
Q  482 tttgaaagagagaaatgatatttgtacaatcactttat 519  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  41353577 tttgaaaaagagaaatgatatttgtacaatcaatttat 41353540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 490 - 518
Target Start/End: Complemental strand, 42251992 - 42251964
Alignment:
Q  490 agagaaatgatatttgtacaatcacttta 518  Q
    |||||||||||||||||||||||||||||    
T  42251992 agagaaatgatatttgtacaatcacttta 42251964  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 519
Target Start/End: Complemental strand, 16337142 - 16337113
Alignment:
Q  490 agagaaatgatatttgtacaatcactttat 519  Q
    ||||||||||||||||||||||||||||||    
T  16337142 agagaaatgatatttgtacaatcactttat 16337113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 488 - 517
Target Start/End: Original strand, 586896 - 586925
Alignment:
Q  488 agagagaaatgatatttgtacaatcacttt 517  Q
    ||||||||||||||||||||||||||||||    
T  586896 agagagaaatgatatttgtacaatcacttt 586925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 491 - 519
Target Start/End: Original strand, 37690429 - 37690457
Alignment:
Q  491 gagaaatgatatttgtacaatcactttat 519  Q
    |||||||||||||||||||||||||||||    
T  37690429 gagaaatgatatttgtacaatcactttat 37690457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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