View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8270_low_10 (Length: 367)
Name: NF8270_low_10
Description: NF8270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8270_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 15 - 160
Target Start/End: Complemental strand, 6581957 - 6581813
Alignment:
| Q |
15 |
tcaattaagtctctttgttgtttctcttttttgtttaaaactttcaaattctcataatctattaaataaaactacaatttgaattgattgaatattgaaa |
114 |
Q |
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| T |
6581957 |
tcaattaagtctctttctcgtttctcttttttgtttaaaactttcaaattctcataatctatt-aacaaaactacaatttaaattaactgaatattgaaa |
6581859 |
T |
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| Q |
115 |
atattatttcactcaaaaatcaccaactaagctatcaaactgaact |
160 |
Q |
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| T |
6581858 |
atattatttcactcaaaactcaccaactaagttatcaaattgaact |
6581813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 6758092 - 6758002
Alignment:
| Q |
17 |
aattaagtctctttgttgtttctcttttttgtttaaaactttcaaattctcataatctattaaataaaactacaatttgaattgattgaat |
107 |
Q |
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| T |
6758092 |
aattaagtctctttgttgtttttcttttttgtttaaaactttcaaattctcataatctattaaaaagaactacaatttgaattgattgaat |
6758002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 6660183 - 6660093
Alignment:
| Q |
17 |
aattaagtctctttgttgtttctcttttttgtttaaaactttcaaattctcataatctattaaataaaactacaatttgaattgattgaat |
107 |
Q |
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| T |
6660183 |
aattaagtctctttgttgtttttcttttttgtttaaaactttcaaattctcataatttattaaaaagaactacaatttgaattgattgaat |
6660093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 6740585 - 6740495
Alignment:
| Q |
17 |
aattaagtctctttgttgtttctcttttttgtttaaaactttcaaattctcataatctattaaataaaactacaatttgaattgattgaat |
107 |
Q |
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| T |
6740585 |
aattaagtctctttgttgtttttcttttttgtttaaaactttcaaattctcataatttattaaaaagaactacaatttgaattgattgaat |
6740495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 243 - 313
Target Start/End: Complemental strand, 6581675 - 6581606
Alignment:
| Q |
243 |
aattggaaaacatctaattctacgctggcccacttaataattgtaacaaagcac--tgaccacataattatat |
313 |
Q |
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| T |
6581675 |
aattggaaaacatctaattctactctgacccact---taattgtaacaaagcactgtgtccacataattatat |
6581606 |
T |
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