View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8270_low_12 (Length: 325)
Name: NF8270_low_12
Description: NF8270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8270_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 5216269 - 5216550
Alignment:
| Q |
18 |
ataatttctttgtaatttcagatattttcannnnnnnnncttctgttatgaattctatagaagttt-----------aagttggttgttcaaaacagtga |
106 |
Q |
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| T |
5216269 |
ataatttctttgtaattttagatattttcatttttttttcttctgttatgaattctatagaagtttctgaaacgaccaagttggttgttcaaaacagtga |
5216368 |
T |
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| Q |
107 |
ttagattaattagcaaggaagtgtaattatgtaactaattaatcgggtttctgtttcatcgcttaggaaacaagataacggcttcattcgttcctataat |
206 |
Q |
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| T |
5216369 |
ttagattaattagcaaggaagtgtaattatgtaactaattaatcgggtttctgtttcattgcttaggaaacaagataacggcttcattcgttcctataat |
5216468 |
T |
|
| Q |
207 |
tatccatattgtttcacgttattatactttgaatatttcaaaactatgtacagcctgtgattatgtgaatctgtattctttc |
288 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
5216469 |
tatgcatattgtttcacgttattatactttgaatatttcaaaactatgtacagcctgtgattatgtgaatctttattgtttc |
5216550 |
T |
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