View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8270_low_14 (Length: 312)
Name: NF8270_low_14
Description: NF8270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8270_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 23 - 296
Target Start/End: Complemental strand, 37969944 - 37969662
Alignment:
| Q |
23 |
gataataagatcaaaaggatcataaatttatagtttaattgatgttgctacaaagtacatgaacatatg--------ttttcatcatcaaataaattttc |
114 |
Q |
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| T |
37969944 |
gataataagatcaaaaggatcataaatttatagtttaattgatgttgctacaaagtacatgaacatatgaacatatgttttcatcatcaaataaattttc |
37969845 |
T |
|
| Q |
115 |
caataacaccataatgatcccgttctccccgnnnnnnnnn-ctttgaagatgatcccattccccatatacatccaaataaatcatcaatattgtttgaaa |
213 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37969844 |
caataacaccataatgatcccgttctccccgttttttttttctttgaagatgatcccattccccatatacatccaaataaatcatcaatattgtttgaaa |
37969745 |
T |
|
| Q |
214 |
ctgttaacccatgattgtgacaagattttcgaatccttcccaagattgttaaccttaaatttacaaacaacatgagatgtcat |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37969744 |
ctgttaacccatgattgtgacaagattttcgaatccttcccaagattgttaaccttaaatttacaaacaacatgagatgtcat |
37969662 |
T |
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