View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8270_low_15 (Length: 277)
Name: NF8270_low_15
Description: NF8270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8270_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 8 - 261
Target Start/End: Original strand, 3739694 - 3739947
Alignment:
| Q |
8 |
tttggtgttcaatgttgccaatgcgggagatgtttctagtgttagtatcaaagggtctaataccgaatggattcccatgtcacacaattgggggcaaaat |
107 |
Q |
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| T |
3739694 |
tttggtgttcaatgttgccaatgcgggagatgtttctagtgttagtatcaaagggtctaataccggatggattcccatgtcacacaattgggggcaaaat |
3739793 |
T |
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| Q |
108 |
tggaataccggaatgaatttggtaggacaagccttatcattccaagttactacaagtggtggaaaaactttagagttagattcagttgctccttcgaatt |
207 |
Q |
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| T |
3739794 |
tggaatactggaatgaatttggtaggacaagccttatcattccaagttactacaagtggcggaaaaactttagagttagattcagttgctccttcgaatt |
3739893 |
T |
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| Q |
208 |
ggcaatttgggcagacctatgagggtaatggaaatttttagatacgtataattt |
261 |
Q |
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| T |
3739894 |
ggcaatttgggcagacctatgagggtaatggaaatttttagatacgtataattt |
3739947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 8 - 251
Target Start/End: Original strand, 3745411 - 3745654
Alignment:
| Q |
8 |
tttggtgttcaatgttgccaatgcgggagatgtttctagtgttagtatcaaagggtctaataccgaatggattcccatgtcacacaattgggggcaaaat |
107 |
Q |
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| T |
3745411 |
tttggtgcacaatgttgccaatgctggtgatgtttctcgtgtgagtattaaagggtccaagacaagttggatttctatgtcacgtaattggggacaaaat |
3745510 |
T |
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| Q |
108 |
tggaataccggaatgaatttggtaggacaagccttatcattccaagttactacaagtggtggaaaaactttagagttagattcagttgctccttcgaatt |
207 |
Q |
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| T |
3745511 |
tggcatcctggatctaattttgtaggacaagctttgtcatttcaagttagtacaagtgatggaaaaactttaacgtttgattccgttgttccttccaact |
3745610 |
T |
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| Q |
208 |
ggcaatttgggcagacctatgagggtaatggaaatttttagata |
251 |
Q |
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| T |
3745611 |
ggcaatttggacagacttatcaggccaagggaaatttttagata |
3745654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 261
Target Start/End: Original strand, 3732344 - 3732599
Alignment:
| Q |
9 |
ttggtgttcaatgttgccaatgcgggagatgtttctagtgttagtatcaaagggtctaatac---cgaatggattcccatgtcacacaattgggggcaaa |
105 |
Q |
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| T |
3732344 |
ttggtgtataatgttgccaatgctggtgatgtttctcatgttagtgttagagggtcgaagacgaccggttggatttcgatgtcacacaattggggacaaa |
3732443 |
T |
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| Q |
106 |
attggaataccggaatgaatttggtaggacaagccttatcattccaagttactacaagtggtggaaaaactttagagttagattcagttgctccttcgaa |
205 |
Q |
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| T |
3732444 |
attgggacactagagtgaaattgttaggacaaagcttgtcatttcttgttacaacaagtgatggaaaaatgttgggttttccttttgttgttccttcgaa |
3732543 |
T |
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| Q |
206 |
ttggcaatttgggcagacctatgagggtaatggaaatttttagatacgtataattt |
261 |
Q |
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| T |
3732544 |
ttggcaatttggtcagacgtacgagggtaagcaaaatttttaaatttgtataattt |
3732599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 229
Target Start/End: Complemental strand, 20522238 - 20522017
Alignment:
| Q |
8 |
tttggtgttcaatgttgccaatgcgggagatgtttctagtgttagtatcaaagggtctaataccgaatggattcccatgtcacacaattgggggcaaaat |
107 |
Q |
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| T |
20522238 |
tttggtgtataatgttgctaatgcaggtgatgttttaagtgtgagaatcaaagggtctagtacatattggatttccatggcacacaattggggacaattt |
20522139 |
T |
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| Q |
108 |
tggaataccggaatgaatttggtaggacaagccttatcattccaagttactacaagtggtggaaaaactttagagttagattcagttgctccttcgaatt |
207 |
Q |
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| T |
20522138 |
tgggatactggattgaatttggttggtcaagacttatcatttttggttactacaagcgatggaaaagctttagagtttaattttgttgctccttctaatt |
20522039 |
T |
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| Q |
208 |
ggcaatttgggcagacctatga |
229 |
Q |
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| T |
20522038 |
ggcaatttggacaaacctatga |
20522017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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