View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8270_low_2 (Length: 566)
Name: NF8270_low_2
Description: NF8270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8270_low_2 |
 | |
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| [»] chr1 (8 HSPs) |
| |
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Alignment Details
Target: chr1 (Bit Score: 477; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 18 - 566
Target Start/End: Original strand, 15766408 - 15766956
Alignment:
| Q |
18 |
attatcacttacataatctatgaaagaatcattgtcaagattatgcaaaagttgaccaagaatcctagaggtatttcacttcttcaaagaatgagcatag |
117 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||| |||| ||||||||||||||||||| |
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|
| T |
15766408 |
attatcacttacatactctatgaaagtttcattgtcaagattatgcaaaagttgactaagaatcctagagggattacactccttcaaagaatgagcatag |
15766507 |
T |
|
| Q |
118 |
ggttcataatccatatagtgataatgacagttgcatccatgattgaaagacatagacttagtgtggccaaaaaccatgaagttccattgagcatattcat |
217 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||||| ||||||||||||||| ||||||||||||| |||||| |||||||||||||| ||||||||||| |
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|
| T |
15766508 |
ggttcataatccacatagtgataatgatagttgcattcatgattgaaagacaaagacttagtgtggtcaaaaaacatgaagttccattaagcatattcat |
15766607 |
T |
|
| Q |
218 |
tttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcatgaagagt |
317 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15766608 |
tttgcttccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcatgaagagc |
15766707 |
T |
|
| Q |
318 |
cttggaacatcatactcattaactactactggaattggtagttttctcagcacttttcttctctcaacagtttcacatgtcactgagaaacacggtcgcc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
15766708 |
cttggaacatcatactcattaactactactggaattggtagttttctcagcacttttcttctctcagcagtttcacatgtcactgagaaacacggtcgcc |
15766807 |
T |
|
| Q |
418 |
gagggtggattttgaataacttgaatgcttctcatcttgattactactatgcatttttggctatactaaatgtcataaactttgtcttctttgtggttgt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15766808 |
gagggtggattttgaataacttgaatgcttctcatcttgattactactatgcatttttggctatactaaatgtcataaactttgtcttctttgtggttgt |
15766907 |
T |
|
| Q |
518 |
ttcaaagttctatgtgcatagagctgagatttcaaattctctaaaagtt |
566 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15766908 |
ttcaaagttctatgtgcatagagctgacatttcaaattctctaaaagtt |
15766956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 18 - 566
Target Start/End: Original strand, 15755539 - 15756087
Alignment:
| Q |
18 |
attatcacttacataatctatgaaagaatcattgtcaagattatgcaaaagttgaccaagaatcctagaggtatttcacttcttcaaagaatgagcatag |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15755539 |
attatcacttacataatctatgaaagactcattgtcaagattatgcaaaagttgaccaagaatcctagaggtatttcacttcttcaaagaatgagcatag |
15755638 |
T |
|
| Q |
118 |
ggttcataatccatatagtgataatgacagttgcatccatgattgaaagacatagacttagtgtggccaaaaaccatgaagttccattgagcatattcat |
217 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
15755639 |
ggttcataatccacatagtgataatgacagttgcatccatgattgaaagacatagacttagtgtggccaaaaaacatgaagttccattaagcatattcat |
15755738 |
T |
|
| Q |
218 |
tttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcatgaagagt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15755739 |
tttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcatgaagagt |
15755838 |
T |
|
| Q |
318 |
cttggaacatcatactcattaactactactggaattggtagttttctcagcacttttcttctctcaacagtttcacatgtcactgagaaacacggtcgcc |
417 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | | |
|
|
| T |
15755839 |
cttggaacatcatattccttaactactactggaattggtagttttctcagcacttttcttctctcaacagtttcacatgtcactgagaaacatggtggtc |
15755938 |
T |
|
| Q |
418 |
gagggtggattttgaataacttgaatgcttctcatcttgattactactatgcatttttggctatactaaatgtcataaactttgtcttctttgtggttgt |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
15755939 |
gagggtggattttgaataacttgaatgcttctcatcttgattactactatgcatttttggccatactaaatgtcttgaactttgtcttctttgtggttgt |
15756038 |
T |
|
| Q |
518 |
ttcaaagttctatgtgcatagagctgagatttcaaattctctaaaagtt |
566 |
Q |
| |
|
|||||||||||||||| |||||||| |||| || |||||||||||| |
|
|
| T |
15756039 |
ttcaaagttctatgtgtcaagagctgaagtttctaactctctaaaagtt |
15756087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 18 - 565
Target Start/End: Original strand, 15779523 - 15780091
Alignment:
| Q |
18 |
attatcacttacataatctatgaaagaatcattgtcaagattatgcaaaagttgaccaagaatcctagaggtatttcacttcttcaaagaatgagcatag |
117 |
Q |
| |
|
|||||||| || |||||||||||| || |||||||||||||||| | |||||| ||||| |||||||| ||| | |||||||||||||||||||||| |
|
|
| T |
15779523 |
attatcacgtatataatctatgaacatttctttgtcaagattatgcagaggttgactaagaaccctagagggattactcttcttcaaagaatgagcatag |
15779622 |
T |
|
| Q |
118 |
ggttcataatccatatagtgataatgacagttgcatccatgattgaaagacatagacttagtgtggccaaaaaccatgaagt------------------ |
199 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||| || ||||||||||||||| |||||||||| | |||| ||| |
|
|
| T |
15779623 |
gattcataatccatatagtgataatgatagttgcatatttggctgaaagacatagactatttgtggccaaagaacatggagtaattgaaaatggaggaca |
15779722 |
T |
|
| Q |
200 |
---tccattgagcatattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaa |
296 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||| | || ||||| || ||||||||||| ||||| |||||||||||||| ||| |
|
|
| T |
15779723 |
ggttccattgagcatattcattttggctccacaatttgtacttatgggaatagcagaagccctcttagagggtgccaaaattgagtttttctatgaccaa |
15779822 |
T |
|
| Q |
297 |
gcaccagaaagcatgaagagtcttggaacatcatactcattaactactactggaattggtagttttctcagcacttttcttctctcaacagtttcacatg |
396 |
Q |
| |
|
|| ||||||||||||||||| ||||| | || || || ||||||||||| || ||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
15779823 |
gccccagaaagcatgaagagccttgggagttcgtattccttaactactacgggcattggtagtttccttagcacttttcttctctcaacagtttcacata |
15779922 |
T |
|
| Q |
397 |
tcactgagaaacacggtcgccgagggtggattttgaataacttgaatgcttctcatcttgattactactatgcatttttggctatactaaatgtcataaa |
496 |
Q |
| |
|
|||| ||||||| ||| || ||||||||||||||| ||| | |||||||||||||||||||||||||| ||||||||||| |||||||||| | | || |
|
|
| T |
15779923 |
tcacaaagaaacatagtcaccaagggtggattttgaacaacctaaatgcttctcatcttgattactactacgcatttttggcaatactaaatgccctgaa |
15780022 |
T |
|
| Q |
497 |
ctttgtcttctttgtggttgtttcaaagttctatgtgcatagagctgagatttcaaattctctaaaagt |
565 |
Q |
| |
|
||| | ||||| || |||| ||||| ||||||| | |||||||| ||||| ||||||||||||| |
|
|
| T |
15780023 |
cttcattttcttcatgattgtctcaaaaatctatgtctacagagctgaagtttcagattctctaaaagt |
15780091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 198 - 565
Target Start/End: Original strand, 15737625 - 15737992
Alignment:
| Q |
198 |
gttccattgagcatattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaag |
297 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| | |||||| ||| ||||| ||||| ||||||||||||| |
|
|
| T |
15737625 |
gttccattgagcatattcattttgcttccacaatttatacttatgggaacagctgaagcattcatagaggttgctaaaattgagttcttctatgatcaag |
15737724 |
T |
|
| Q |
298 |
caccagaaagcatgaagagtcttggaacatcatactcattaactactactggaattggtagttttctcagcacttttcttctctcaacagtttcacatgt |
397 |
Q |
| |
|
| ||||||||||||||||||||||| || || || ||||| |||| || ||||| |||||| | || ||||||||||| |||||||||||||| | |
|
|
| T |
15737725 |
ctccagaaagcatgaagagtcttggcacttcttattcattgactagcttaggtattggaagttttataagtacttttcttctatcaacagtttcacacat |
15737824 |
T |
|
| Q |
398 |
cactgagaaacacggtcgccgagggtggattttgaataacttgaatgcttctcatcttgattactactatgcatttttggctatactaaatgtcataaac |
497 |
Q |
| |
|
||||||| |||| |||| | |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||| | ||| |
|
|
| T |
15737825 |
cactgaggaacatggtcacaaagggtggattttgaataatcttaatgcttctcatcttgattactactatgcatttttggcaatactaaatgtcttgaac |
15737924 |
T |
|
| Q |
498 |
tttgtcttctttgtggttgtttcaaagttctatgtgcatagagctgagatttcaaattctctaaaagt |
565 |
Q |
| |
|
||| |||||||| ||||| |||||| ||||| |||||||||| |||||| |||| ||||||| |
|
|
| T |
15737925 |
tttatcttcttttgtattgttacaaagtattatgtatatagagctgaaatttcagattccataaaagt |
15737992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 197 - 509
Target Start/End: Original strand, 15730021 - 15730333
Alignment:
| Q |
197 |
agttccattgagcatattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaa |
296 |
Q |
| |
|
|||||||||||||||||||||||| || || |||||| ||||||||||| ||||| ||| ||||||||| ||| ||||| ||||| |||||||||||| |
|
|
| T |
15730021 |
agttccattgagcatattcattttactccctcaatttttacttatgggaacagctgatgcatttttagaggttgctaaaattgagttcttctatgatcaa |
15730120 |
T |
|
| Q |
297 |
gcaccagaaagcatgaagagtcttggaacatcatactcattaactactactggaattggtagttttctcagcacttttcttctctcaacagtttcacatg |
396 |
Q |
| |
|
|| ||||||||||||||||| | || || || || ||| | |||| || ||||| | |||| | || ||||||||||| |||||||||||||| |
|
|
| T |
15730121 |
gctccagaaagcatgaagagcttgggcacttcttattcaatgactagcttaggcattggaaattttattagtacttttcttctatcaacagtttcacaca |
15730220 |
T |
|
| Q |
397 |
tcactgagaaacacggtcgccgagggtggattttgaataacttgaatgcttctcatcttgattactactatgcatttttggctatactaaatgtcataaa |
496 |
Q |
| |
|
|||||||| |||| |||| | |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
15730221 |
tcactgaggaacatggtcacaaagggtggattttgaataatcttaatgcttctcatcttgattactactatgcatttttggctatactaaatgtcttgaa |
15730320 |
T |
|
| Q |
497 |
ctttgtcttcttt |
509 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
15730321 |
ctttatcttcttt |
15730333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 196 - 325
Target Start/End: Complemental strand, 33411715 - 33411586
Alignment:
| Q |
196 |
aagttccattgagcatattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatca |
295 |
Q |
| |
|
||||||| ||||| || ||||||||||| || || ||||||||||||||| ||||| ||| || |||||| ||| ||||| ||||||||||||||||| |
|
|
| T |
33411715 |
aagttcctttgagtattttcattttgcttcctcagtttatacttatgggaacagctgatgcatttctagaggttgcgaaaatcgagtttttctatgatca |
33411616 |
T |
|
| Q |
296 |
agcaccagaaagcatgaagagtcttggaac |
325 |
Q |
| |
|
||| |||||||||||||||||| ||||||| |
|
|
| T |
33411615 |
agctccagaaagcatgaagagtattggaac |
33411586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 419 - 475
Target Start/End: Complemental strand, 33411492 - 33411436
Alignment:
| Q |
419 |
agggtggattttgaataacttgaatgcttctcatcttgattactactatgcattttt |
475 |
Q |
| |
|
||||||||||||||| || |||||| |||||||||||||||||||||||| ||||| |
|
|
| T |
33411492 |
agggtggattttgaacaatctgaatgattctcatcttgattactactatgcgttttt |
33411436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 49 - 188
Target Start/End: Original strand, 15737455 - 15737594
Alignment:
| Q |
49 |
ttgtcaagattatgcaaaagttgaccaagaatcctagaggtatttcacttcttcaaagaatgagcatagggttcataatccatatagtgataatgacagt |
148 |
Q |
| |
|
||||||||||||||||||| | ||| || || |||||||| ||| | || |||||||| ||| ||||||| | ||||| |||||| |||| ||| ||| |
|
|
| T |
15737455 |
ttgtcaagattatgcaaaaatggactaaaaaccctagaggaattactctacttcaaaggatgggcataggcatgataattcatataatgattatggtagt |
15737554 |
T |
|
| Q |
149 |
tgcatccatgattgaaagacatagacttagtgtggccaaa |
188 |
Q |
| |
|
|||| | | | ||||||| |||| |||||||| |||||| |
|
|
| T |
15737555 |
tgcaactttcactgaaagatataggcttagtgtagccaaa |
15737594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 276 - 329
Target Start/End: Complemental strand, 39256639 - 39256586
Alignment:
| Q |
276 |
atggagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatca |
329 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||| ||||||||| ||||| |
|
|
| T |
39256639 |
atggagtttttttatgatcaagcaccagaaggcatgaaaagtcttggagcatca |
39256586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 331
Target Start/End: Complemental strand, 39193647 - 39193595
Alignment:
| Q |
279 |
gagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcata |
331 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
39193647 |
gagttcttctatgatcaagcaccagaaggcatgaaaagtctcggaacatcata |
39193595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 279 - 331
Target Start/End: Complemental strand, 39223000 - 39222948
Alignment:
| Q |
279 |
gagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcata |
331 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||| ||||| ||||||||||| |
|
|
| T |
39223000 |
gagttcttctatgatcaagcaccagaaggcatgaaaagtctcggaacatcata |
39222948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 276 - 326
Target Start/End: Complemental strand, 39238670 - 39238620
Alignment:
| Q |
276 |
atggagtttttctatgatcaagcaccagaaagcatgaagagtcttggaaca |
326 |
Q |
| |
|
|||||||| ||||| |||||||| ||||||| |||||||||||| |||||| |
|
|
| T |
39238670 |
atggagttcttctacgatcaagcgccagaaaccatgaagagtctcggaaca |
39238620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 39176920 - 39176879
Alignment:
| Q |
285 |
ttctatgatcaagcaccagaaagcatgaagagtcttggaaca |
326 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||| |||||| |
|
|
| T |
39176920 |
ttctatgatcaagcaccagaaggcatgaaaagtctcggaaca |
39176879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 39259888 - 39259835
Alignment:
| Q |
279 |
gagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcatac |
332 |
Q |
| |
|
|||||||| || |||||||| |||||| |||||| |||||||||||||||||| |
|
|
| T |
39259888 |
gagtttttttacgatcaagcgccagaatccatgaaaagtcttggaacatcatac |
39259835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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