View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8270_low_5 (Length: 533)
Name: NF8270_low_5
Description: NF8270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8270_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 25 - 332
Target Start/End: Original strand, 338519 - 338829
Alignment:
| Q |
25 |
aaaacaaatgacttctacggtttaaagtaattttttcaacgacaaaatttatagccgattaattttacaaaacgaacatatactagtaaaatattgaaac |
124 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
338519 |
aaaataaatgacttctacggtttaaagtaattttttcaacgacaaaatttatagccggttaattttacaaaacgaacatatactagtaaaatattgaaac |
338618 |
T |
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| Q |
125 |
aacatatatagcaaataacgcctcgtacaacaaaaaccctaaataagacatcatccaactgaaggttaccccaaaactcacatagaaaaagcctcggtct |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||| |
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| T |
338619 |
aacatatatagcaaataacgcctcgtacaacaaaaacctcaaataagacatcatccaaccgaaggctaccccaaaactcacctagaaaaagcctcggtct |
338718 |
T |
|
| Q |
225 |
ccaaacccacaagcggagaaactccaattaagtccacacatgcatgcctccttcctaccc-cctatacacc--aacatctgtcgaaatattatatattaa |
321 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
338719 |
ccaaacccacaagcggagaaactccaattaaatccacacatgcatgtctccttcctacccacctatacaccaaaacatctgtcgaaatattatatattaa |
338818 |
T |
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| Q |
322 |
ccaaatgagat |
332 |
Q |
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| T |
338819 |
ccaaatgagat |
338829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 382 - 431
Target Start/End: Original strand, 338913 - 338962
Alignment:
| Q |
382 |
cagatgtggaaaatttatgctccaaacgtaagaaagaaaataagagtttt |
431 |
Q |
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| T |
338913 |
cagatgtggaaaatttatgcaccaaacgtaagaaagaaaataagagtttt |
338962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 54927607 - 54927674
Alignment:
| Q |
217 |
ctcggtctccaaacccacaagcggagaaactccaattaagtccacacatgcatgcctccttcctaccc |
284 |
Q |
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| T |
54927607 |
ctcggtccctaaacccacaagtggggaaaccccaatcaagtccacacatgcatgtttccctcctaccc |
54927674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 27715466 - 27715518
Alignment:
| Q |
211 |
aaaagcctcggtctccaaacccacaagcggagaaactccaattaagtccacac |
263 |
Q |
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| T |
27715466 |
aaaagcctcggcctccaatcccacaaggggaaaaatcccaattaagtccacac |
27715518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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