View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8270_low_6 (Length: 453)
Name: NF8270_low_6
Description: NF8270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8270_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 9 - 363
Target Start/End: Original strand, 50644405 - 50644758
Alignment:
| Q |
9 |
acatcaacaagaagaaaaaaggca---ctgacattttaaatactagtgatgaaataatgaattatttaggaggtgggtgaatagccgttttcaaatatat |
105 |
Q |
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| T |
50644405 |
acatcaacaagaagaaaaaaggcaacactgacattttaaatactagtgatgaaataatgaattatttaggaggtgggtgaatagccgttttcaaatatat |
50644504 |
T |
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| Q |
106 |
atcatcgaatcaagctatcctctactaaccattaatccatcgatgattgcatgcatacttcacctcaatgacatgatataagcatattaattgtacactt |
205 |
Q |
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| T |
50644505 |
atcatcgaatcaagctatcctctactagccattaatccatcgatgattgcatgcatacttcacctcaatgacatgatataagcat----attgtacactt |
50644600 |
T |
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| Q |
206 |
taacctcgcttctcttactttgcagatagtatgtatatttgttgagccaatgaaaatgcagtgcctagcggaaaacacgacgaaatggcggagaacacaa |
305 |
Q |
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| T |
50644601 |
taacctcgcttctcttactttgcagatagtatgtatatttgttgagccaatgaaaattcagtgcctagcggaaaacacgacggaatggcggagaacacaa |
50644700 |
T |
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| Q |
306 |
aagccaaagccattaaaatttgccaactgtctcgtgaactcattcgctatccattcct |
363 |
Q |
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| T |
50644701 |
aagccaaagccattaaaatttgccaactgtctcgtgaactcattcgctatgcattcct |
50644758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 359 - 442
Target Start/End: Original strand, 50644788 - 50644871
Alignment:
| Q |
359 |
ttcctgaaaatgctctttataacgaaagcatgcttttacgaaccttcacgacacccttaatagtttaactctttgtatatgatg |
442 |
Q |
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| T |
50644788 |
ttcctaaaaatgctttttataacgaaagcatgctttcacgaaccttcacgacacccttaaaagtttaactccttgtatatgatg |
50644871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 353
Target Start/End: Original strand, 34467494 - 34467597
Alignment:
| Q |
250 |
agccaatgaaaatgcagtgcctagcggaaaacacgacgaaatggcggagaacacaaaagccaaagccattaaaatttgccaactgtctcgtgaactcatt |
349 |
Q |
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| T |
34467494 |
agccaatgaaaatgtagtgcctaacggaaaacatgtcaggatggcggaaaacacggaatccaaaaccactaaaacatgccaagtgtctcatgaactcctt |
34467593 |
T |
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| Q |
350 |
cgct |
353 |
Q |
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|||| |
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| T |
34467594 |
cgct |
34467597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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