View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8270_low_7 (Length: 446)
Name: NF8270_low_7
Description: NF8270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8270_low_7 |
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| [»] scaffold0079 (1 HSPs) |
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| [»] scaffold0384 (2 HSPs) |
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Alignment Details
Target: scaffold0079 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 134 - 438
Target Start/End: Original strand, 5579 - 5885
Alignment:
| Q |
134 |
aaggtgcttgcttgcagggagagatgtgcctaaactcttctggcctgaagcagttaaatgagtcactatgaatcagttcaagcttaatatgaacataggg |
233 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5579 |
aaggtgcttgcttgtagggagagatgtgcctaaactcttctggcctgaagcagttaaatgggtcactatgaatcagttcaagcttaatatgaacataggg |
5678 |
T |
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| Q |
234 |
atttaatattaaaaaacataaatattagnnnnnnnncacaaatatagggatttaatatgttgaaactgacaatccagagcaagcacaagcagcacttttc |
333 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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| T |
5679 |
atttaatattaaaaaacataaatattagaaaaaaaacacaaatatagggatttaatatgttgaaactgacaatccagagcaagcacaagcagcagttctc |
5778 |
T |
|
| Q |
334 |
ctggcgatgggtaataagagcaagacaatagtgcttatgacattagaaaatc--tagggttggtatcgattaccaggaatctttaacaatttcacatcat |
431 |
Q |
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| T |
5779 |
ctagcgatgggtaataagagcaagacaatagtgcttatgacattagaaaatctatagggttggtatcgattaccaggaatctttaacaatttcacatcag |
5878 |
T |
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| Q |
432 |
tcttctc |
438 |
Q |
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||||||| |
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| T |
5879 |
tcttctc |
5885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0384 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: scaffold0384
Description:
Target: scaffold0384; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 196 - 438
Target Start/End: Original strand, 3098 - 3326
Alignment:
| Q |
196 |
tcactatgaatcagttcaagcttaatatgaacatagggatttaatattaaaaaacataaatattagnnnnnnnncacaaatatagggatttaatatgttg |
295 |
Q |
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| T |
3098 |
tcactatgaatcagttcaagcttaatatgaacatagggatttaatattaaaaaaaaaaca--------------cacaaatacagggatttaatatgttg |
3183 |
T |
|
| Q |
296 |
aaactgacaatccagagcaagcacaagcagcacttttcctggcgatgggtaataagagcaagacaatagtgcttatgacattagaaaatctagggttggt |
395 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3184 |
aaactgacaatccagaacaagcacaagcagcacttctcctggggatgggtaataagagcaagacaatagtgcttatgacattagaaaatctagggttggt |
3283 |
T |
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| Q |
396 |
atcgattaccaggaatctttaacaatttcacatcattcttctc |
438 |
Q |
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| T |
3284 |
atcgattaccaggaatctttaacaatttcacatcagtcttctc |
3326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0384; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 17 - 199
Target Start/End: Original strand, 2874 - 3056
Alignment:
| Q |
17 |
taatgcattcaatgaattctgcaatattgaagggatcaagaggcaattgacaactgcttacacacctcaggaaaatggtgtgtctgaaaggaagaataga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
2874 |
taatgcattcaatgaattctgcaatattgaagggatcaagaggcaactgacaactgcttacacacctcagcaaaatggtttgtctgaaaggaagaataga |
2973 |
T |
|
| Q |
117 |
accattatgaacatggcaaggtgcttgcttgcagggagagatgtgcctaaactcttctggcctgaagcagttaaatgagtcac |
199 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
2974 |
accattatgaacatggtaaggtgcttgcttgcagggagatatgtacctaaactcttctggcctgaagcagttaaatgggtcac |
3056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 17 - 193
Target Start/End: Complemental strand, 6578399 - 6578223
Alignment:
| Q |
17 |
taatgcattcaatgaattctgcaatattgaagggatcaagaggcaattgacaactgcttacacacctcaggaaaatggtgtgtctgaaaggaagaataga |
116 |
Q |
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|||| |||| ||||||||||||| | ||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||| |||| ||||||||| |
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| T |
6578399 |
taattcatttaatgaattctgcagtgttgaagggatcaaaaggcaattgacaactgcctacacacctaaggaaaatggtgtgtctcaaagaaagaataga |
6578300 |
T |
|
| Q |
117 |
accattatgaacatggcaaggtgcttgcttgcagggagagatgtgcctaaactcttctggcctgaagcagttaaatg |
193 |
Q |
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|| ||||||||||||| ||||||||||||||| ||||||||||| || || | || |||||||||||||||||||| |
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| T |
6578299 |
acaattatgaacatggtaaggtgcttgcttgctgggagagatgtacccaagttattgtggcctgaagcagttaaatg |
6578223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 22 - 193
Target Start/End: Original strand, 607548 - 607719
Alignment:
| Q |
22 |
cattcaatgaattctgcaatattgaagggatcaagaggcaattgacaactgcttacacacctcaggaaaatggtgtgtctgaaaggaagaatagaaccat |
121 |
Q |
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| T |
607548 |
cattcaatgaatactgcactattgaagggataaagaggcaactgacaacttcttacacacctcagcaaaatggtgtatcagagaggaagaatagaaccat |
607647 |
T |
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| Q |
122 |
tatgaacatggcaaggtgcttgcttgcagggagagatgtgcctaaactcttctggcctgaagcagttaaatg |
193 |
Q |
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| T |
607648 |
tatgaatatggttagatgtttacttgcaagaagaggtttacctaaactcttttagcctgaagcagttaaatg |
607719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 54 - 186
Target Start/End: Original strand, 42969831 - 42969963
Alignment:
| Q |
54 |
aagaggcaattgacaactgcttacacacctcaggaaaatggtgtgtctgaaaggaagaatagaaccattatgaacatggcaaggtgcttgcttgcaggga |
153 |
Q |
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| T |
42969831 |
aagagacaactgacagctgcctatacacctcaacaaaatggtgtgtctaaaaggaagaatagaaccatcatgaatatggtaaggtgcttgcttgctggga |
42969930 |
T |
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| Q |
154 |
gagatgtgcctaaactcttctggcctgaagcag |
186 |
Q |
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|||| || ||| | || ||||||||||||| |
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| T |
42969931 |
agaatgtaccaaaagtgttttggcctgaagcag |
42969963 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 27 - 190
Target Start/End: Complemental strand, 7851097 - 7850934
Alignment:
| Q |
27 |
aatgaattctgcaatattgaagggatcaagaggcaattgacaactgcttacacacctcaggaaaatggtgtgtctgaaaggaagaatagaaccattatga |
126 |
Q |
| |
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||||||||||||| ||||||||| |||||||| ||| ||||||||||||||||||| ||| |||||||||| ||||| || ||||| ||||||||||||| |
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| T |
7851097 |
aatgaattctgcagtattgaaggaatcaagagacaactgacaactgcttacacaccccagcaaaatggtgtatctgagagaaagaacagaaccattatga |
7850998 |
T |
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| Q |
127 |
acatggcaaggtgcttgcttgcagggagagatgtgcctaaactcttctggcctgaagcagttaa |
190 |
Q |
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| T |
7850997 |
acattgtaagatgcttgcttgcaggaagagatgtcccaaaattattctggcctgaagcagttaa |
7850934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 118
Target Start/End: Complemental strand, 40611959 - 40611892
Alignment:
| Q |
51 |
atcaagaggcaattgacaactgcttacacacctcaggaaaatggtgtgtctgaaaggaagaatagaac |
118 |
Q |
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||||| || |||||||| ||||||||||||||||| |||||||||| || || || ||||||||||| |
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| T |
40611959 |
atcaaaagacaattgaccactgcttacacacctcaacaaaatggtgtttcagagagaaagaatagaac |
40611892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 22 - 195
Target Start/End: Complemental strand, 46432809 - 46432636
Alignment:
| Q |
22 |
cattcaatgaattctgcaatattgaagggatcaagaggcaattgacaactgcttacacacctcaggaaaatggtgtgtctgaaaggaagaatagaaccat |
121 |
Q |
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|||| ||||||||||| | ||||||||| ||||||||| |||||||||||||||||||||| || ||||||||||| |||| || ||||| | ||| || |
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| T |
46432809 |
catttaatgaattctgtattattgaaggaatcaagaggaaattgacaactgcttacacaccacaacaaaatggtgtgcctgagagaaagaacaaaactat |
46432710 |
T |
|
| Q |
122 |
tatgaacatggcaaggtgcttgcttgcagggagagatgtgcctaaactcttctggcctgaagcagttaaatgag |
195 |
Q |
| |
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||||||||||| ||| | |||||||||||| |||||||| | ||| | || ||||||||||| |||||||||| |
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| T |
46432709 |
tatgaacatggtaagatacttgcttgcaggaagagatgtactaaaatttttttggcctgaagctgttaaatgag |
46432636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 66 - 114
Target Start/End: Complemental strand, 10783119 - 10783071
Alignment:
| Q |
66 |
acaactgcttacacacctcaggaaaatggtgtgtctgaaaggaagaata |
114 |
Q |
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||||||||||||||||||||| |||||||||| || || || ||||||| |
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| T |
10783119 |
acaactgcttacacacctcagcaaaatggtgtatcagagagaaagaata |
10783071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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