View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8270_low_8 (Length: 385)
Name: NF8270_low_8
Description: NF8270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8270_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 105 - 368
Target Start/End: Complemental strand, 41954315 - 41954051
Alignment:
| Q |
105 |
attcatgtttagtttgtattaagtgtgtatgtcagctaagttttgatgtttgatataacataaggcgtgtagttctttatgaggctgctcctaacttcaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
41954315 |
attcatgtttagtttgtattaagtgtgtatgtcagctaagttttgatgtttggtataacataaggcgtgtagttctttatgaggctgctcctgacttcaa |
41954216 |
T |
|
| Q |
205 |
ttcatttgccttttatcaactgctgcttattcagtgtgacatagtaaacaagatcgagaccgattatagtcgaaatgctcgtgatgaagccaa-aaaatg |
303 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||| |
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| T |
41954215 |
ttcatttgccttttagcaactaatgcttattcagtgtgacatagtaaacaagatcgagaccaattaaagtcgaaatgctcgtgatgaagccaaaaaaatg |
41954116 |
T |
|
| Q |
304 |
actcgtaactggatagaaagaaaaattgtggattctcacatttcctttgtcaatatcagttgatg |
368 |
Q |
| |
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| T |
41954115 |
atccgtaactggatagaaagaaaaattgtggattctcacatttcctttgtcaatatcagttgatg |
41954051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 259 - 355
Target Start/End: Original strand, 27429740 - 27429837
Alignment:
| Q |
259 |
cgagaccgattatagtcgaaatgctcgtgatgaagccaaaaaa-tgactcgtaactggatagaaagaaaaattgtggattctcacatttcctttgtca |
355 |
Q |
| |
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||||||| | ||||||||||||| |||||||||||||||||| ||| |||||||||||||||| ||| | ||||||||||||| |||||||||| |
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| T |
27429740 |
cgagaccaaatatagtcgaaatgtgcgtgatgaagccaaaaaaatgatccgtaactggatagaaaaaaagacattggattctcacatctcctttgtca |
27429837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 344
Target Start/End: Original strand, 49722936 - 49723119
Alignment:
| Q |
162 |
acataaggcgtgtagttctttatgaggctgctcctaacttcaattcatttgccttttatcaactgctgcttattcagtgtgacatagtaaacaagatcga |
261 |
Q |
| |
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||||||| |||||||| |||| |||| |||||| |||||||| | |||||||||||||||||| | || | ||| ||| | ||| ||||| ||| |
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| T |
49722936 |
acataagttgtgtagttttttacgaggatgctccccacttcaatacctttgccttttatcaactgatttttgtccagcatgataaagtgaacaaatccga |
49723035 |
T |
|
| Q |
262 |
gaccgattatagtcgaaatgctcgtgatgaagccaaaaa-atgactcgtaactggatagaaagaaaaattgtggattctcacat |
344 |
Q |
| |
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|||| | | ||||| ||| || ||||||||||||||||| |||| ||||||||||||| || ||| | | ||||||||||||| |
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| T |
49723036 |
gaccaagtttagtcaaaacgcgcgtgatgaagccaaaaatatgatccgtaactggataggaaaaaagactttggattctcacat |
49723119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 105 - 360
Target Start/End: Original strand, 35707152 - 35707410
Alignment:
| Q |
105 |
attcatgtttagtttgtattaagtgtgtatgtcagctaagttttgatgtttgatataacataaggcgtgtagttctttatgaggctgctcctaacttcaa |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| | |||||||||||| || |||| |||||| |
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|
| T |
35707152 |
attcatgtttagtttgtattaagtgtgtatgtcagctaagttttgatgtttggtataacataaggtgtgcaattctttatgaggttgttcctgacttcat |
35707251 |
T |
|
| Q |
205 |
ttcatttgccttttatcaactgctgcttattcagtgtgacatagtaaacaagatcgagaccgattatagtcgaaatgctcgtgatgaagccaaaaa-atg |
303 |
Q |
| |
|
||||||||||||||||||| || ||||||| ||| |||||||||||||||||| ||||| |||||||||||||||| |||||||||| |||||| ||| |
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| T |
35707252 |
ttcatttgccttttatcaagtgttgcttatctggtgcgacatagtaaacaagatcaagaccaattatagtcgaaatgcgcgtgatgaagtcaaaaacatg |
35707351 |
T |
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| Q |
304 |
--actcgtaactggatagaaagaaaaattgtggattctcacatttcctttgtcaatatc |
360 |
Q |
| |
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| | |||||| ||||||||||| | ||||||||||||||||||||||||||||||| |
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|
| T |
35707352 |
atatccataactgaatagaaagaaagactgtggattctcacatttcctttgtcaatatc |
35707410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 354
Target Start/End: Complemental strand, 25001898 - 25001802
Alignment:
| Q |
259 |
cgagaccgattatagtcgaaatgctcgtgatgaagccaaaaaa-tgactcgtaactggatagaaagaaaaattgtggattctcacatttcctttgtc |
354 |
Q |
| |
|
||||||| | ||||||||||||| |||||||||||||||| ||| |||||||||||||| || ||| | | ||||||||||| | ||||||||| |
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|
| T |
25001898 |
cgagaccaaatatagtcgaaatgtgtatgatgaagccaaaaaaatgattcgtaactggataggaaaaaatactttggattctcacgtctcctttgtc |
25001802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 141; Significance: 8e-74; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 105 - 368
Target Start/End: Complemental strand, 34222414 - 34222150
Alignment:
| Q |
105 |
attcatgtttagtttgtattaagtgtgtatgtcagctaagttttgatgtttgatataacataaggcgtgtagttctttatgaggctgctcctaacttcaa |
204 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| ||| ||| | ||||||||||| |||| |||||| |
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| T |
34222414 |
attcaagtttagtttgtattaagtgtgtatgtcagctgagttttgatgtttggaatcacataaggtgtgcagtgccttatgaggctgttcctgacttcat |
34222315 |
T |
|
| Q |
205 |
ttcatttgccttttatcaactgctgcttattcagtgtgacatagtaaacaagatcgagaccgattatagtcgaaatgctcgtgatgaagccaa-aaaatg |
303 |
Q |
| |
|
| |||||||||||||||||| | ||||| ||||| ||||| || ||||||||||||||| |||||||||||||||| |||||||||||||| |||||| |
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| T |
34222314 |
tctgtttgccttttatcaactgtttcttatccagtgcgacatggtgaacaagatcgagaccaattatagtcgaaatgcgcgtgatgaagccaaaaaaatg |
34222215 |
T |
|
| Q |
304 |
actcgtaactggatagaaagaaaaattgtggattctcacatttcctttgtcaatatcagttgatg |
368 |
Q |
| |
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| |||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
34222214 |
atccgtacctgaatagaaagaaagattgtggattctcacatttcctttgtcaatatcagtggatg |
34222150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 105 - 362
Target Start/End: Original strand, 3340156 - 3340415
Alignment:
| Q |
105 |
attcatgtttagtttgtattaagtgtgtatgtcagctaagttttgatgtttgatataacataaggcgtgtagttctttatgaggctgctcctaacttcaa |
204 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||||||||||| || |||||||| ||| ||| | ||||||||||| |||| |||||| |
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|
| T |
3340156 |
attcaagtttagtttgtattaagtgtgtatgtcagctgagttttgatgtttggaatcacataaggtgtgcagtgccttatgaggctgttcctgacttcat |
3340255 |
T |
|
| Q |
205 |
ttcatttgccttttatcaactgctgcttattcagtgtgacatagtaaacaagatcgagaccgattatagtcgaaatgctcgtgatgaagc--caaaaaat |
302 |
Q |
| |
|
| |||||||||||||||||| | ||||| ||| ||||| || ||||||||||||||| |||||||||||||||| ||||||||||| ||||||| |
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|
| T |
3340256 |
tatgtttgccttttatcaactgtttcttatctggtgcgacatggtgaacaagatcgagaccaattatagtcgaaatgcgcgtgatgaagctaaaaaaaat |
3340355 |
T |
|
| Q |
303 |
gactcgtaactggatagaaagaaaaattgtggattctcacatttcctttgtcaatatcag |
362 |
Q |
| |
|
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
3340356 |
gatccgtaactggatagaaagaaagattgtggattctcacatttcctttgtcaatatcag |
3340415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 260 - 355
Target Start/End: Complemental strand, 4928640 - 4928543
Alignment:
| Q |
260 |
gagaccgattatagtcgaaatgctcgtgatgaagccaaaaaa--tgactcgtaactggatagaaagaaaaattgtggattctcacatttcctttgtca |
355 |
Q |
| |
|
|||||| | ||||||||||||| |||||||||||||||||| ||| |||||||| ||||| || ||| | | ||||||||||||| |||||||||| |
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|
| T |
4928640 |
gagaccaaatatagtcgaaatgtgcgtgatgaagccaaaaaaaatgattcgtaactagataggaaaaaagactttggattctcacatctcctttgtca |
4928543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 106 - 224
Target Start/End: Original strand, 11777348 - 11777466
Alignment:
| Q |
106 |
ttcatgtttagtttgtattaagtgtgtatgtcagctaagttttgatgtttgatataacataaggcgtgtagttctttatgaggctgctcctaacttcaat |
205 |
Q |
| |
|
|||| |||||||||||||||||||||||| || || |||||||||| | || || |||||||| |||||||| ||||||||| |||||| |||||||| |
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|
| T |
11777348 |
ttcaagtttagtttgtattaagtgtgtatcgcaactgagttttgatgctagaaatcacataaggtgtgtagttatttatgaggatgctccctacttcaat |
11777447 |
T |
|
| Q |
206 |
tcatttgccttttatcaac |
224 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
11777448 |
acatttgccttttatcaac |
11777466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 265 - 362
Target Start/End: Original strand, 15009155 - 15009252
Alignment:
| Q |
265 |
cgattatagtcgaaatgctcgtgatgaagccaaaaaatgactcgtaactggatagaaagaaaaattgtggattctcacatttcctttgtcaatatcag |
362 |
Q |
| |
|
|||||||||| ||||||| |||| ||||||||||||||| ||||||||||||||| ||||| |||||||||||||| || |||||||| |||||| |
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|
| T |
15009155 |
cgattatagttgaaatgcatgtgacgaagccaaaaaatgatccgtaactggatagaagaaaaaactgtggattctcacaattactttgtcattatcag |
15009252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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