View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8270_low_9 (Length: 384)
Name: NF8270_low_9
Description: NF8270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8270_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 124 - 365
Target Start/End: Original strand, 45539665 - 45539906
Alignment:
| Q |
124 |
tatttcatacatttaatgttgtaatatttagcggagatgcacatattgaagatataaatactgcagtttgtgtcttttctattacgattgtatatgatat |
223 |
Q |
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| T |
45539665 |
tatttcatacatttaatgttgtaatatttagcggagatgcacatattgaagatataaatactgcagtttgtgtcttttctattacgattgtatatgatat |
45539764 |
T |
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| Q |
224 |
caacaatgttataaagggcatgaaaaaattggaagcttgtgtgaatttgtttatagttattgacatatatatttgagtgtgtttgtatgcaagtttagta |
323 |
Q |
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| T |
45539765 |
caacaatgttataaagggcatgaaagaattggaagcttgtgtgaatttgtttatagttattgacatatatatttgagtgtgtttgtatgcaagtttagta |
45539864 |
T |
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| Q |
324 |
tttttcttgtcgtgatggagtttcgcacctcttttccttgat |
365 |
Q |
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| T |
45539865 |
tttttcttgtcgtgatggagtttcgcacctcttttccttgat |
45539906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 45539560 - 45539602
Alignment:
| Q |
19 |
taatctttaaataattatgtgttatgattagataaataattgg |
61 |
Q |
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| T |
45539560 |
taatctttaaataattatgtgttatgattagataaataattgg |
45539602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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