View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8271_high_1 (Length: 422)
Name: NF8271_high_1
Description: NF8271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8271_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Complemental strand, 5744335 - 5743931
Alignment:
| Q |
1 |
aacataacaaaaatcatttgtttcattgtcattttcaatagataataaaacactagaaggaaaaattggaaagatgagagtatgtatcaatatataaact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5744335 |
aacataacaaaaatcatttgtttcattgtcattttcaatagataataaaacactagaaggaaaaattggaaagatgagagtatgtatcaatatataaact |
5744236 |
T |
|
| Q |
101 |
atttctctcttgctctacttatagaagagatcttcaaaggatggtaacataaggcacatgaaatttagtttgtatcatgtgaggttcatgcatacacata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5744235 |
atttctctcttgctctacttatagaagagatcttcaaaggatggtaacataaggcacatgaaatttagtttgtatcatgtgaggttcatgcatacacata |
5744136 |
T |
|
| Q |
201 |
tgtatgcgtaagtgttgcatg-nnnnnnnagcacaaaatagtaaaattctcgtgcattcgcatattgaggcgagaataatgtacacatttctgttgtgta |
299 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5744135 |
tgtatgcgtaagtgttgcatgttttttttagcacaaaatagtaaaattctcgtgcattcgcatattgaggcgagaataatgtacacatttctgttgtgta |
5744036 |
T |
|
| Q |
300 |
tatagaatatggtgcagggaaggcaagctagttgcgtgctgttgctagatatgagttggtatgaaagataggtacaacttactggtttgtagcattgggt |
399 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5744035 |
tatagaatatggtgcagggaaagcaaactagttgcgtgttgttgctagatatgagttggtatgaaagataggtacgacttactggtttgtagcattgggt |
5743936 |
T |
|
| Q |
400 |
gcgtg |
404 |
Q |
| |
|
||||| |
|
|
| T |
5743935 |
gcgtg |
5743931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University