View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8271_low_1 (Length: 601)

Name: NF8271_low_1
Description: NF8271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8271_low_1
NF8271_low_1
[»] chr4 (9 HSPs)
chr4 (492-586)||(24056783-24056877)
chr4 (168-234)||(21867441-21867507)
chr4 (168-234)||(21923302-21923368)
chr4 (482-526)||(22905032-22905076)
chr4 (482-526)||(22956700-22956744)
chr4 (482-526)||(43441788-43441832)
chr4 (483-526)||(44645346-44645389)
chr4 (454-530)||(26728493-26728569)
chr4 (468-540)||(34821674-34821746)
[»] chr1 (1 HSPs)
chr1 (184-236)||(3213944-3213996)
[»] chr8 (2 HSPs)
chr8 (474-532)||(4903479-4903537)
chr8 (475-528)||(3961182-3961235)
[»] scaffold0272 (1 HSPs)
scaffold0272 (169-234)||(2472-2537)
[»] chr7 (1 HSPs)
chr7 (474-514)||(32016682-32016722)


Alignment Details
Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 492 - 586
Target Start/End: Original strand, 24056783 - 24056877
Alignment:
Q  492 agccaccactttggacggagctgaactcttccaaatatgcgtaaacaccttgacttgcatctccgttagcgatccctcctcaaaccgcatcccct 586  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  24056783 agccaccactttggacggagctgaactcttccaaatatgcgtaaacaccttgactcgcatctctgttagcgatccctcctcaaaccgcatcccct 24056877  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 21867441 - 21867507
Alignment:
Q  168 gtcatttctcaccctccaaattgtccaaatcgccgcatgccaaataagccggtaccctttacgaatc 234  Q
    ||||||||| || | ||||||||||||||| ||||||||||| |||| || |||||| |||||||||    
T  21867441 gtcatttctaactcgccaaattgtccaaatagccgcatgccagataatccagtaccccttacgaatc 21867507  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 234
Target Start/End: Original strand, 21923302 - 21923368
Alignment:
Q  168 gtcatttctcaccctccaaattgtccaaatcgccgcatgccaaataagccggtaccctttacgaatc 234  Q
    ||||||||| || | ||||||||||||||| ||||||||||| |||| || |||||| |||||||||    
T  21923302 gtcatttctaactcgccaaattgtccaaatagccgcatgccagataatccagtaccccttacgaatc 21923368  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 482 - 526
Target Start/End: Original strand, 22905032 - 22905076
Alignment:
Q  482 tccaagaaaaagccaccactttggacggagctgaactcttccaaa 526  Q
    |||||||||||||||| |||||||||||||| | |||||||||||    
T  22905032 tccaagaaaaagccacgactttggacggagccggactcttccaaa 22905076  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 482 - 526
Target Start/End: Original strand, 22956700 - 22956744
Alignment:
Q  482 tccaagaaaaagccaccactttggacggagctgaactcttccaaa 526  Q
    |||||||||||||||| |||||||||||||| | |||||||||||    
T  22956700 tccaagaaaaagccacgactttggacggagccggactcttccaaa 22956744  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 482 - 526
Target Start/End: Original strand, 43441788 - 43441832
Alignment:
Q  482 tccaagaaaaagccaccactttggacggagctgaactcttccaaa 526  Q
    |||||||||||||||| |||||||||||||| | |||||||||||    
T  43441788 tccaagaaaaagccacgactttggacggagccggactcttccaaa 43441832  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 483 - 526
Target Start/End: Complemental strand, 44645389 - 44645346
Alignment:
Q  483 ccaagaaaaagccaccactttggacggagctgaactcttccaaa 526  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||    
T  44645389 ccaagaaaaagccaccaccttggatggagccgaactcttccaaa 44645346  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 454 - 530
Target Start/End: Complemental strand, 26728569 - 26728493
Alignment:
Q  454 ttcgtcgggatccaatcataaagaagtttccaagaaaaagccaccactttggacggagctgaactcttccaaatatg 530  Q
    |||||||| |||||||||| ||| | ||||||||| ||  | |||||||| |||||||| | ||| |||||||||||    
T  26728569 ttcgtcggtatccaatcatgaagcaatttccaagagaattctaccactttagacggagccggacttttccaaatatg 26728493  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 540
Target Start/End: Original strand, 34821674 - 34821746
Alignment:
Q  468 atcataaagaagtttccaagaaaaagccaccactttggacggagctgaactcttccaaatatgcgtaaacacc 540  Q
    ||||| |||||||||||||| |||  | |||||||| || ||||| |||||||||| ||| |||| |||||||    
T  34821674 atcatgaagaagtttccaagcaaagacgaccactttagatggagccgaactcttccgaatttgcgcaaacacc 34821746  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 3213996 - 3213944
Alignment:
Q  184 caaattgtccaaatcgccgcatgccaaataagccggtaccctttacgaatcct 236  Q
    |||||||||||||||| |||||| |||||||||||||| |||||  |||||||    
T  3213996 caaattgtccaaatcgacgcatgtcaaataagccggtaacctttttgaatcct 3213944  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 532
Target Start/End: Complemental strand, 4903537 - 4903479
Alignment:
Q  474 aagaagtttccaagaaaaagccaccactttggacggagctgaactcttccaaatatgcg 532  Q
    |||||||||||||| |||| |||||||||| ||||| || |  ||||||||||||||||    
T  4903537 aagaagtttccaagtaaaaaccaccactttcgacggtgccgggctcttccaaatatgcg 4903479  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 528
Target Start/End: Original strand, 3961182 - 3961235
Alignment:
Q  475 agaagtttccaagaaaaagccaccactttggacggagctgaactcttccaaata 528  Q
    ||||||||||||||||||||||| || || || |||||||| || |||||||||    
T  3961182 agaagtttccaagaaaaagccacgacctttgagggagctgagcttttccaaata 3961235  T

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Target: scaffold0272 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 234
Target Start/End: Complemental strand, 2537 - 2472
Alignment:
Q  169 tcatttctcaccctccaaattgtccaaatcgccgcatgccaaataagccggtaccctttacgaatc 234  Q
    ||||||||||||||||||||  |||||| ||| || |||||||| | || ||| ||||||||||||    
T  2537 tcatttctcaccctccaaatactccaaaccgcggcgtgccaaatcaaccagtaacctttacgaatc 2472  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 474 - 514
Target Start/End: Complemental strand, 32016722 - 32016682
Alignment:
Q  474 aagaagtttccaagaaaaagccaccactttggacggagctg 514  Q
    |||||||||||||||||||||||| ||||| ||||| ||||    
T  32016722 aagaagtttccaagaaaaagccacaacttttgacggggctg 32016682  T

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