View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8271_low_11 (Length: 222)
Name: NF8271_low_11
Description: NF8271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8271_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 3e-72; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 434163 - 434316
Alignment:
| Q |
1 |
agtttgaacgaacacggaaaaatgttttcaatttaacaaccaaaaacaaaccttgacttcgaattttttcactgtcttaatcataaatctgtcatcttgg |
100 |
Q |
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| T |
434163 |
agtttgaacgaacacggaaaaatgttttcaatttaacaaccaaaaacaaaccttgacttcggattttttgactgtcttaatcataaatctgtcatcttgg |
434262 |
T |
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| Q |
101 |
gtcaagtggaagaaaattccaattttgccaggagattaaagctacctgagggaa |
154 |
Q |
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| T |
434263 |
gtcaagtggaagaaaattccacttttgccaggagattaaagctccctgagggaa |
434316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 32938610 - 32938459
Alignment:
| Q |
1 |
agtttgaacgaacacggaaaaatgttttcaatttaacaaccaaaaacaaaccttgacttcgaattttttcactgtcttaatcataaatctgtcatcttgg |
100 |
Q |
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| T |
32938610 |
agtttgaacaaacatggaaaaatgttttcaatttaacaaccaaaaacaaaccttgacttcggattttttcaccgtctttatcataaatctatcatcttgg |
32938511 |
T |
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| Q |
101 |
gtcaagtggaagaaaattccaattttgccaggagattaaagctacctgaggg |
152 |
Q |
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| T |
32938510 |
gtcaagtagaagaagcttccacttttgccaggagatgaaagctccctgaggg |
32938459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 151 - 222
Target Start/End: Original strand, 434350 - 434423
Alignment:
| Q |
151 |
ggaaatggcttcctcaattgtaaaagaactt--nnnnnnnnngacttaaattatacttatgaaaaagaactgac |
222 |
Q |
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| T |
434350 |
ggaaatggcttcctcaattgtaaaagaactttaaaaaaaaaagacttaaattatacttaggaaaaagaactgac |
434423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 24524459 - 24524401
Alignment:
| Q |
49 |
aaccttgacttcgaattttttcactgtcttaatcataaatctgtcatcttgggtcaagt |
107 |
Q |
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| T |
24524459 |
aaccttgacttcagatttcttcactgtcttaatcatgaatctgtcatcttgggtcaagt |
24524401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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