View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8271_low_12 (Length: 221)
Name: NF8271_low_12
Description: NF8271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8271_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 49188501 - 49188321
Alignment:
| Q |
20 |
agatgaaaggtgaaattggttcaaaattgagggaaggacaaacgctgcagaatgcagcaaaaattgatgcagagacgaaggttattgcgatgcagagagc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49188501 |
agatgaaaggtgaaattggttcaaaattgagggaaggacaaacgctgcagaatgcagcaaaaattgatgcagagacgaaggttattgcgatgcagagagc |
49188402 |
T |
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| Q |
120 |
tggagagggtgagaaggagggaattaaagtgaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49188401 |
tggagagggtgagaaggagggaattaaagtgaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctca |
49188321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 49208514 - 49208336
Alignment:
| Q |
20 |
agatgaaaggtgaaattggttcaaaattgagggaaggacaaacgctgcagaatgcagcaaaaattgatgcagagacgaaggttattgcgatgcagagagc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
49208514 |
agatgaaaggtgaaattggttcaaaattgagggaaggacaaacgatccagaacgcagcgaaaattgatgcagagacgaaggttattgcgatgcagagggc |
49208415 |
T |
|
| Q |
120 |
tggagagggtgagaaggagggaattaaagtgaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggct |
198 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
49208414 |
tggagaaggtgagaaacagggaattaaagtgaggactgaagtgaaagtttttgagaatcaaagagaggctgaagtggct |
49208336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 49192237 - 49192059
Alignment:
| Q |
20 |
agatgaaaggtgaaattggttcaaaattgagggaaggacaaacgctgcagaatgcagcaaaaattgatgcagagacgaaggttattgcgatgcagagagc |
119 |
Q |
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||||||||||||| |||||||| |||||||||||||||||||| || || |||||||||||||||||||||||||| ||| |||||||||||||||| || |
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| T |
49192237 |
agatgaaaggtgagattggttcgaaattgagggaaggacaaacactacaaaatgcagcaaaaattgatgcagagacaaagattattgcgatgcagagggc |
49192138 |
T |
|
| Q |
120 |
tggagagggtgagaaggagggaattaaagtgaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggct |
198 |
Q |
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||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
49192137 |
tggagagggcgacaaggagggaattaaagtgaggactgaagtgaaggtttttgagaatcagagagaagctgaagtggct |
49192059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 49213354 - 49213176
Alignment:
| Q |
20 |
agatgaaaggtgaaattggttcaaaattgagggaaggacaaacgctgcagaatgcagcaaaaattgatgcagagacgaaggttattgcgatgcagagagc |
119 |
Q |
| |
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|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || || |
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| T |
49213354 |
agatgaaaggtgaaattggttcgaaattgagggtaggacaaacgctgcagaatgcagcaaaaattgatgcagagacgaaggttatagcgatgcaaagggc |
49213255 |
T |
|
| Q |
120 |
tggagagggtgagaaggagggaattaaagtgaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggct |
198 |
Q |
| |
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||||| |||||||| |||||||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||| |
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| T |
49213254 |
aggagaaagtgagaagcagggaattaaagtgagaactgaagtgaaagtatttgagaatcagagagaggctgaagtggct |
49213176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 49203339 - 49203165
Alignment:
| Q |
20 |
agatgaaaggtgaaattggttcaaaattgagggaaggacaaacgctgcagaatgcagcaaaaattgatgcagagacgaaggttattgcgatgcagagagc |
119 |
Q |
| |
|
||||||||||||||||| | ||||||||| ||||| ||||||||||||||||||| || |||||||||||||| || |||||||| ||||||| | |
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| T |
49203339 |
agatgaaaggtgaaattcg----aaattgaggcaaggaaaaacgctgcagaatgcagcgaagattgatgcagagacaaaagttattgcactgcagaggac |
49203244 |
T |
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| Q |
120 |
tggagagggtgagaaggagggaattaaagtgaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggct |
198 |
Q |
| |
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||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
49203243 |
cggatagggtgacaaggagggaattaaagtgaggactgaagtgaaggtttttgagaatcagagagaggctgaggtggct |
49203165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 37031012 - 37030832
Alignment:
| Q |
20 |
agatgaaaggtgaaattggttcaaaattgagggaaggacaaacgctgcagaatgcagcaaaaattgatgcagagacgaaggttattgcgatgcagagagc |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37031012 |
agatgaaaggtgaaattggttcaaaattgagggaaggacaaacgctgcagaatgcagcgaaaattgatgcagagacgaaggttattgcaatgcagagagc |
37030913 |
T |
|
| Q |
120 |
tggagagggtgagaaggagggaattaaagtgaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggctca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37030912 |
tggagagggtgagaaggagggaattaaagtgaggactgaagtgaaagtttttgagaatcaaagagaggctgaagtggctca |
37030832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 51825030 - 51824851
Alignment:
| Q |
12 |
agaagcagagatgaaaggtgaaattggttcaaaattgagggaaggacaaacgctgcagaatgcagcaaaaattgatgcagagacgaaggttattgcgatg |
111 |
Q |
| |
|
|||||| ||||||||||||||| ||||||| |||| |||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
51825030 |
agaagctgagatgaaaggtgaagttggttcgaaatctagggaaggacaaacactgcagaatgcagcaaaaattgacgcagagacgaaagttattgcgatg |
51824931 |
T |
|
| Q |
112 |
cagagagctggagagggtgagaaggagggaattaaagtgaggactgaagtgaaggtttttgagaatcaaagagaggctga |
191 |
Q |
| |
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||||| ||||||||| || | ||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
51824930 |
cagagggctggagagagtaacaaggagggatttagagttaggactgaagtgaaggtttttgagaatcaaagagaggctga |
51824851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 31527619 - 31527441
Alignment:
| Q |
20 |
agatgaaaggtgaaattggttcaaaattgagggaaggacaaacgctgcagaatgcagcaaaaattgatgcagagacgaaggttattgcgatgcagagagc |
119 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||||||||||| ||||||||||||||||||||||| || |||||||| ||||||| |||||||| || |
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| T |
31527619 |
agatgaaaggtgaagttggctcaaaatctagggaaggacaaacactgcagaatgcagcaaaaattgacgcggagacgaaaattattgctatgcagagggc |
31527520 |
T |
|
| Q |
120 |
tggagagggtgagaaggagggaattaaagtgaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggct |
198 |
Q |
| |
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||||||| |||| ||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31527519 |
tggagagagtgacaaggagggatttagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggct |
31527441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 32592312 - 32592490
Alignment:
| Q |
20 |
agatgaaaggtgaaattggttcaaaattgagggaaggacaaacgctgcagaatgcagcaaaaattgatgcagagacgaaggttattgcgatgcagagagc |
119 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||||||||||| ||||||||||||||||||||| | || |||||||| ||||||| |||||||| || |
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| T |
32592312 |
agatgaaaggtgaagttggctcaaaatctagggaaggacaaacactgcagaatgcagcaaaaattaacgcggagacgaaaattattgctatgcagagggc |
32592411 |
T |
|
| Q |
120 |
tggagagggtgagaaggagggaattaaagtgaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggct |
198 |
Q |
| |
|
||||||| |||| ||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32592412 |
tggagagagtgacaaggagggatttagagttaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggct |
32592490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 26756880 - 26756703
Alignment:
| Q |
20 |
agatgaaaggtgaaattggttcaaaattgagggaaggacaaacgctgcagaatgcagcaaaaattgatgcagagacgaaggttattgcgatgcagagagc |
119 |
Q |
| |
|
|||||||||||||| |||| || |||| |||| ||||||||||||||||||||||||| |||||||||||||||||||| || ||||||| |||||| || |
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| T |
26756880 |
agatgaaaggtgaagttggatcgaaatcgaggaaaggacaaacgctgcagaatgcagcgaaaattgatgcagagacgaaagtcattgcgacgcagagggc |
26756781 |
T |
|
| Q |
120 |
tggagagggtgagaaggagggaattaaagtgaggactgaagtgaaggtttttgagaatcaaagagaggctgaagtggc |
197 |
Q |
| |
|
|||||||| ||||||||| | ||||||||| ||||||||||||||||||||||||||| | ||||||||||| ||||| |
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| T |
26756780 |
tggagaggctgagaaggaagaaattaaagttaggactgaagtgaaggtttttgagaataagagagaggctgaggtggc |
26756703 |
T |
|
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