View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8271_low_13 (Length: 209)
Name: NF8271_low_13
Description: NF8271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8271_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 114; Significance: 5e-58; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 52 - 193
Target Start/End: Original strand, 2326257 - 2326397
Alignment:
| Q |
52 |
ttcatctctgcttctccgatcgtcctaaagcacttcccaatcacaaactcatatctagcaaccagcacaacatcagcgccgctttttatggcccaacatg |
151 |
Q |
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| T |
2326257 |
ttcatctct-cttctccgatcgtcctaaagcacttcccagtcacaaactcatatctagcaaccagcacaacatcagcgccgctttttatggcccaacatg |
2326355 |
T |
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| Q |
152 |
gcgtaccctctgttgtaacctcgcctccgagatgcttcatcc |
193 |
Q |
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| T |
2326356 |
gtgtaccctccgtcgtaacctcgcctctgagatgcttcatcc |
2326397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 62 - 193
Target Start/End: Original strand, 2329981 - 2330112
Alignment:
| Q |
62 |
cttctccgatcgtcctaaagcacttcccaatcacaaactcatatctagcaaccagcacaacatcagcgccgctttttatggcccaacatggcgtaccctc |
161 |
Q |
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| T |
2329981 |
cttctctgatcgtcctaaagcacttcccactaacaaactcatgtccagcaaccagcacaatatcagctccgctttttatggaccaacatggcgtactctc |
2330080 |
T |
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| Q |
162 |
tgttgtaacctcgcctccgagatgcttcatcc |
193 |
Q |
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| T |
2330081 |
cgtcgtaacctcgcctccgagatgcttcatcc |
2330112 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 2320458 - 2320543
Alignment:
| Q |
108 |
agcaaccagcacaacatcagcgccgctttttatggcccaacatggcgtaccctctgttgtaacctcgcctccgagatgcttcatcc |
193 |
Q |
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| T |
2320458 |
agcaaccaacacaacatcagctccgctttttatggcccaacatggcgtaccctccgtcgtaaccttgcttccgagatgcttcatcc |
2320543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 108 - 194
Target Start/End: Original strand, 2302757 - 2302843
Alignment:
| Q |
108 |
agcaaccagcacaacatcagcgccgctttttatggcccaacatggcgtaccctctgttgtaacctcgcctccgagatgcttcatcct |
194 |
Q |
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| T |
2302757 |
agcaaccaacacaacatcagctccggtttttatggcccaacatggcgtaccctccgtcgtaaccttgcttccgagatacttcatcct |
2302843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 2309469 - 2309554
Alignment:
| Q |
108 |
agcaaccagcacaacatcagcgccgctttttatggcccaacatggcgtaccctctgttgtaacctcgcctccgagatgcttcatcc |
193 |
Q |
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| T |
2309469 |
agcaaccaacacaacatcaacaccgctttttatggcccaacatggcgtaccctccgtcgtaaccttgctttcgagatgcttcatcc |
2309554 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 108 - 193
Target Start/End: Original strand, 2293138 - 2293223
Alignment:
| Q |
108 |
agcaaccagcacaacatcagcgccgctttttatggcccaacatggcgtaccctctgttgtaacctcgcctccgagatgcttcatcc |
193 |
Q |
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| T |
2293138 |
agcaaccaacacaacatcaacaccgcttattatggcccaacatggcgtacccttcgtcgtaaccttgcttccgagatgcttcatcc |
2293223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 62 - 193
Target Start/End: Original strand, 2350281 - 2350412
Alignment:
| Q |
62 |
cttctccgatcgtcctaaagcacttcccaatcacaaactcatatctagcaaccagcacaacatcagcgccgctttttatggcccaacatggcgtaccctc |
161 |
Q |
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| T |
2350281 |
cttctctgatcgccctagagctcttcccaccgccaaaatcatctccagcaaccaacacaacatcagctccgctttttatggtgcaacatggcgtgccctc |
2350380 |
T |
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| Q |
162 |
tgttgtaacctcgcctccgagatgcttcatcc |
193 |
Q |
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| T |
2350381 |
cgtcgaaaccttgcttctgagatgcttcatcc |
2350412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 49188444 - 49188501
Alignment:
| Q |
1 |
gctgcattctgcagcttttgtcctaccctcaatcttgagccaatttctcctttcatct |
58 |
Q |
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| T |
49188444 |
gctgcattctgcagcgtttgtccttccctcaattttgaaccaatttcacctttcatct |
49188501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 49213297 - 49213354
Alignment:
| Q |
1 |
gctgcattctgcagcttttgtcctaccctcaatcttgagccaatttctcctttcatct |
58 |
Q |
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| T |
49213297 |
gctgcattctgcagcgtttgtcctaccctcaatttcgaaccaatttcacctttcatct |
49213354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 37030955 - 37031012
Alignment:
| Q |
1 |
gctgcattctgcagcttttgtcctaccctcaatcttgagccaatttctcctttcatct |
58 |
Q |
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| T |
37030955 |
gctgcattctgcagcgtttgtccttccctcaattttgaaccaatttcacctttcatct |
37031012 |
T |
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