View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8271_low_6 (Length: 362)
Name: NF8271_low_6
Description: NF8271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8271_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 355
Target Start/End: Original strand, 29841246 - 29841582
Alignment:
| Q |
19 |
taaccttgttacctaactgcaatttaataatcattcttgtggtaaatgaaaaagaagaggactaatgaaaacaatattttatattttataacaggatcat |
118 |
Q |
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| T |
29841246 |
taaccttgtttcctaactgcaatttaataatcattcttgtggtaaatgaaaaagaagaggactaatgaaaacaatattttatattttataacaggatcat |
29841345 |
T |
|
| Q |
119 |
ggagacagctccaacattgcctgaattttccttggcattgaaaccagatgaataccaacttccactagtggactcttcttggagaacagaaaacataaaa |
218 |
Q |
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| T |
29841346 |
ggagacagctccaacattgcctgaattttccttggcattgaaaccagatgaataccaacttccactagtggactcttcttggagaacagaaaacataaaa |
29841445 |
T |
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| Q |
219 |
gtgacacaaactcattctaaccatctcaatggtgacaaatgatcaaatactatgaatttgcaaatcttatgaaaatgttgactttcttgaaaggtgtaag |
318 |
Q |
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| T |
29841446 |
gtgacacaaactcattctaaccatctcaatggtgacaaatgatcaaatactatgaatttgcaaatcttatgaaaatgttgactttcttgaaaggtgtaag |
29841545 |
T |
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| Q |
319 |
tcaaagaatggtgttttctttagatttttcattctct |
355 |
Q |
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| T |
29841546 |
tcaaagaagggtgttttgtttagatttttcattctct |
29841582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 48 - 335
Target Start/End: Complemental strand, 29830262 - 29829973
Alignment:
| Q |
48 |
atcattcttgtggtaaatgaaaaagaagaggactaatgaaaacaatattt-tatattttataacaggatcatggagacagctccaacattgcctgaattt |
146 |
Q |
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| T |
29830262 |
atcattcttgtagtacatgaaaaagaaaaggactaacgtaagcaatactgctgtattttacgacaggatcatggagacagctccaactttgcctgaattt |
29830163 |
T |
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| Q |
147 |
tccttggcattgaaaccagatgaataccaacttccactagtgg-actcttcttggagaacagaaaacataaaagtgacacaaactcattctaaccatctc |
245 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| || ||||||||| |||||||||||||||||||||||||| |
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| T |
29830162 |
tccttggcattgaaaccagatgaatatcaacttccaccagtgggactcttcttggagaactgagaacataaaattgacacaaactcattctaaccatctc |
29830063 |
T |
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| Q |
246 |
aatggtgacaaatgatcaaatactatgaatttgcaaatcttatgaaaatgttgactttcttgaaaggtgtaagtcaaagaatggtgtttt |
335 |
Q |
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| T |
29830062 |
aatggtgacaaatgatcaaatactaggaatttgcaaatcttatgaaaatgttgactttcttgaaaggtgcaagtcaaagaagggtgtttt |
29829973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 211
Target Start/End: Complemental strand, 34623750 - 34623642
Alignment:
| Q |
103 |
tttataacaggatcatggagacagctccaacattgcctgaattttccttggcattgaaaccagatgaataccaacttccactagtggactcttcttggag |
202 |
Q |
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||||| |||| |||||||| ||||| |||||||||||||| ||| ||||||| |||||||||||||| || |||||||||| |||| |||||||||| |
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| T |
34623750 |
tttattacagaatcatggaaacagcaccaacattgcctgattttgccttggccttgaaaccagatgattatcaacttccacaagtgagtccttcttggag |
34623651 |
T |
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| Q |
203 |
aacagaaaa |
211 |
Q |
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||||||||| |
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| T |
34623650 |
aacagaaaa |
34623642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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