View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8271_low_9 (Length: 274)
Name: NF8271_low_9
Description: NF8271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8271_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 43103960 - 43104225
Alignment:
| Q |
1 |
atggactataagttttgaccacaacttatgccaaaggaacnnnnnnnnggccaaacaaacatgcaaacaatcattttggtgattgaataggtgataagtt |
100 |
Q |
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| T |
43103960 |
atggactataagttttgaccacaacttatgccaaaggaacaaaaaaaaggccaaacaaacatgcaaacaatcattttggtgattgaataggtgataagtt |
43104059 |
T |
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| Q |
101 |
gttattacttaccattatctttggatatgattgcaatttcaatacatttaaagattaaagtgacattgtttcacacatccaaaactaaaatggatgtctg |
200 |
Q |
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| T |
43104060 |
gttatcacttaccattatctttggatatgattgcaatttcaatacatttaaagattaaagtgacattgtttcacacatccaaaactaaaatggatgtctg |
43104159 |
T |
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| Q |
201 |
cttgataaacaaccataatctcatccatattcattttgtatatgagttctgtatatatgatgtcca |
266 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||| ||| |||||||||||||||||| |
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| T |
43104160 |
cttgataaacaaccataatctcatccatattcatttggcatataagtgctgtatatatgatgtcca |
43104225 |
T |
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