View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8272_high_1 (Length: 556)
Name: NF8272_high_1
Description: NF8272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8272_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 24 - 507
Target Start/End: Complemental strand, 7108738 - 7108239
Alignment:
| Q |
24 |
tatctctcctctccttttatgttttgccaaagaggtgatgagcagaagtatttctagattggtggatgaaggtaagctagaccttatcaaggggtccaga |
123 |
Q |
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| T |
7108738 |
tatctctcctctccttttatgttttgccaaagaggtgatgagcagaggtatttctagattggtggatgaaggtaagctagaccttatcaaggggtccaga |
7108639 |
T |
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| Q |
124 |
aaaccata----------------gtaatctcattgattcaaggaatactgatacacaatttgttcttatatggtttgccattttcattgttaaaagatt |
207 |
Q |
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| T |
7108638 |
aaaccatatgtccagaaaaccatagtaatctcattgattcaaggaatactgatacacaatttgtccttatatgctttgctattttcattgttaaaagatt |
7108539 |
T |
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| Q |
208 |
tggagagaagcattaggaacttcatttggagtggggacattgagaagaggaaattagtcattgtggcatggaaaaaatttgtaagccattagaggaggga |
307 |
Q |
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| T |
7108538 |
tggagagaagcattaggaacttcatttggagtggggacattgagaagaggaaattagtcattgtggcatgaaaaaaatttgtaagccattagaggaagga |
7108439 |
T |
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| Q |
308 |
gggttaggtattagatatctaatccatcttaatgaagcttataatcttaagctttgttgagagaatggcgtcttctgatacggatcgggcaaagatgtta |
407 |
Q |
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| T |
7108438 |
gggttaggtattagatatctaatccatcttaatgaagcttataatcttaagctttgttgggagaatggcgtcttctgatacggattgggcaaagatgtta |
7108339 |
T |
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| Q |
408 |
aggtctagagttttaaaaaacgatagatgtatttcttatcatattttctcctctttatcgagtagttttaaaagtgagtataatcttgtcatatttctta |
507 |
Q |
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| T |
7108338 |
aggtctagagttttaaaaaatgatagatgtatttcttatcatattttctcctctttatcgagtagttttaaaagtgagtataatcttgtcatatttctta |
7108239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 507 - 544
Target Start/End: Complemental strand, 7108062 - 7108025
Alignment:
| Q |
507 |
atcatatttgttgaattatcaggtgctatgatgtccat |
544 |
Q |
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| T |
7108062 |
atcatatttgttgaattatcaggtgctatgatgaccat |
7108025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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