View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8272_high_2 (Length: 391)

Name: NF8272_high_2
Description: NF8272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8272_high_2
NF8272_high_2
[»] chr7 (1 HSPs)
chr7 (68-360)||(47125658-47125950)


Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 68 - 360
Target Start/End: Original strand, 47125658 - 47125950
Alignment:
Q  68 tattcagaacttcatgagcagtttgcaaaagatataaaagtctcatgatcttcataatcaatgaataaattcattgattataagtcaaaacttacaccca 167  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||    
T  47125658 tattcagaacttcatgagtagtttgcaaaagatataaaagtctcatgatcttcataaacaatgaataaattcattgattataagtcaaaacttatacaca 47125757  T
Q  168 aaaatttcctgcattatataaatagttgatttgataattacaagctcaagtagaaaaagttggagtgcaacttattgatcaatcggacaacggttgtatt 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47125758 aaaatttcctgcattatataaatagttgatttgataattacaagctcaagtagaaaaagttggagtgcaacttattgatcaatcggacaacggttgtatt 47125857  T
Q  268 ggcttgagtttatctttttagggttctttttcatcattaagtatattaattaattggatcaatgatttaagagttgtccctcaaatttttcat 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47125858 ggcttgagtttatctttttagggttctttttcatcattaagtatattaattaattggatcaatgatttaagagttgtccctcaaatttttcat 47125950  T

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